BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0146500 Os03g0146500|AK059776
         (230 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0146500  Galactose-binding like domain containing protein    347   5e-96
Os08g0521800  Conserved hypothetical protein                       85   5e-17

>Os03g0146500 Galactose-binding like domain containing protein
          Length = 230

 Score =  347 bits (890), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 171/187 (91%), Positives = 171/187 (91%)

Query: 44  FVARRSESTFVQQLARPLAEYMSLPASQYSVLDAERIERVDESTFRCYVYRFRFFALEVC 103
           FVARRSESTFVQQLARPLAEYMSLPASQYSVLDAERIERVDESTFRCYVYRFRFFALEVC
Sbjct: 44  FVARRSESTFVQQLARPLAEYMSLPASQYSVLDAERIERVDESTFRCYVYRFRFFALEVC 103

Query: 104 PVLLVRVDEEPNGCCISLLSCKLEGSPLVEAQNDKFSASMVNKVFCNXXXXXXXXXXXXX 163
           PVLLVRVDEEPNGCCISLLSCKLEGSPLVEAQNDKFSASMVNKVFCN             
Sbjct: 104 PVLLVRVDEEPNGCCISLLSCKLEGSPLVEAQNDKFSASMVNKVFCNSSMSDSTSQQLTS 163

Query: 164 XXXIEVTIDIPFPFRALPVEAIESSGKQVLEQLLRVMLPRFLKQLVKDYQAWASGDSSRK 223
              IEVTIDIPFPFRALPVEAIESSGKQVLEQLLRVMLPRFLKQLVKDYQAWASGDSSRK
Sbjct: 164 DTTIEVTIDIPFPFRALPVEAIESSGKQVLEQLLRVMLPRFLKQLVKDYQAWASGDSSRK 223

Query: 224 PLGTGEI 230
           PLGTGEI
Sbjct: 224 PLGTGEI 230



>Os08g0521800 Conserved hypothetical protein
          Length = 260

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 11/160 (6%)

Query: 64  YMSLPASQYSVLDAERIER---VDES----TFRCYVYRFRFFALEVCPVLLVRVDEEPNG 116
           ++  PA   S+L+   ++    VDE+    TFRC +    F   +V PVL +RV    + 
Sbjct: 83  FLRQPAGVESLLNTRALQSFAAVDEAPGANTFRCTLQSIGFLGFQVAPVLDLRVAPTCHD 142

Query: 117 CCISLLSCKLEGSPLVEAQNDKFSASMVNKVFCNXXXXXXXXXXXXXXXXIEVTIDI-PF 175
           C + +LSC+ EGS  VE QN+ FSA M N +                   +EVT+++   
Sbjct: 143 CTVEMLSCRFEGSGSVEQQNELFSAFMSNHI---TWKDDGEEPCLDIDVNLEVTLEVYTK 199

Query: 176 PFRALPVEAIESSGKQVLEQLLRVMLPRFLKQLVKDYQAW 215
           PF  LP+ A+E+ G  +++ LL  ++P   +QL++DY +W
Sbjct: 200 PFSMLPLSAVETPGNLLMQGLLDRLVPLLGEQLLRDYHSW 239



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,370,695
Number of extensions: 178807
Number of successful extensions: 277
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)