BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0520400 Os08g0520400|AK119371
         (466 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0520400  Conserved hypothetical protein                      757   0.0  
Os04g0379300  Methyltransferase type 11 domain containing pr...    66   5e-11

>Os08g0520400 Conserved hypothetical protein
          Length = 466

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/466 (84%), Positives = 395/466 (84%)

Query: 1   MAVSSELEGLQDVEPSRFIAFSFPNPLLLLDHASDPYAHGGHEFLRVAVLDHSSPHPSPR 60
           MAVSSELEGLQDVEPSRFIAFSFPNPLLLLDHASDPYAHGGHEFLRVAVLDHSSPHPSPR
Sbjct: 1   MAVSSELEGLQDVEPSRFIAFSFPNPLLLLDHASDPYAHGGHEFLRVAVLDHSSPHPSPR 60

Query: 61  TAAMLVPAGRHRDWIFSTRAGHLHLLLASRSQCSHLSRLILVGPELSXXXXXXXXXXXXX 120
           TAAMLVPAGRHRDWIFSTRAGHLHLLLASRSQCSHLSRLILVGPELS             
Sbjct: 61  TAAMLVPAGRHRDWIFSTRAGHLHLLLASRSQCSHLSRLILVGPELSAPSPSRVVVVAAA 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXFGGDAIPDVPLLSFHDDLLRLXXXXXXXXXXXXXXX 180
                                   FGGDAIPDVPLLSFHDDLLRL               
Sbjct: 121 ARPDPDPAHARLLPLLLALCPRAAFGGDAIPDVPLLSFHDDLLRLAPVKVVAGPVVGEMV 180

Query: 181 XXXXXXXCAPRSAELRRRLRFKRMPFLVQTQVRLVRQLSPGDSLMLDALDEVGGGSLQPE 240
                  CAPRSAELRRRLRFKRMPFLVQTQVRLVRQLSPGDSLMLDALDEVGGGSLQPE
Sbjct: 181 VEDVAVDCAPRSAELRRRLRFKRMPFLVQTQVRLVRQLSPGDSLMLDALDEVGGGSLQPE 240

Query: 241 VGGELVQPYLQAMAAGLAVIAPSMDESFRLGGKPRXXXXXXXXXXXXMSIRMGLQCDVLG 300
           VGGELVQPYLQAMAAGLAVIAPSMDESFRLGGKPR            MSIRMGLQCDVLG
Sbjct: 241 VGGELVQPYLQAMAAGLAVIAPSMDESFRLGGKPRCLCAGIGGGALLMSIRMGLQCDVLG 300

Query: 301 IEADGVVLDVARSHFGLVEDEFLQVRVGDAIQMIQDFAHQGDPDMNFSAIMVDLDSSDAI 360
           IEADGVVLDVARSHFGLVEDEFLQVRVGDAIQMIQDFAHQGDPDMNFSAIMVDLDSSDAI
Sbjct: 301 IEADGVVLDVARSHFGLVEDEFLQVRVGDAIQMIQDFAHQGDPDMNFSAIMVDLDSSDAI 360

Query: 361 CGVSAPPLEMTKESILLASRTILHRDGAFILNVIPPAADGSFYKGLIDVLRHVFSELYEI 420
           CGVSAPPLEMTKESILLASRTILHRDGAFILNVIPPAADGSFYKGLIDVLRHVFSELYEI
Sbjct: 361 CGVSAPPLEMTKESILLASRTILHRDGAFILNVIPPAADGSFYKGLIDVLRHVFSELYEI 420

Query: 421 NVSNGENFVLVATVSPVETILADSSGSVLTKLRKLAGDFLEHITRI 466
           NVSNGENFVLVATVSPVETILADSSGSVLTKLRKLAGDFLEHITRI
Sbjct: 421 NVSNGENFVLVATVSPVETILADSSGSVLTKLRKLAGDFLEHITRI 466



>Os04g0379300 Methyltransferase type 11 domain containing protein
          Length = 750

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 30/280 (10%)

Query: 192 SAELRRRLRFKRMPFLVQTQVRLVRQLSPGDSLMLDALDEVGGGSLQPEVGG-------- 243
           + ++ RRL FKR   LVQ++  LV+  +   +   +          + +  G        
Sbjct: 446 TEKMFRRLIFKRNSGLVQSEALLVKDSTSDKADENNKKSPSASKKRRNQKKGPSGSKTVL 505

Query: 244 -----ELVQPYLQAMAAGLAVIAPSMDESFRLGGKPRXXXXXXXXXXXXMSIRMGLQ-CD 297
                 L   Y  ++ +G ++IA ++D +   G K              M +R  L   D
Sbjct: 506 RIDHSYLGSSYHSSIISGFSLIASALDSAAVAGTKVSTTVIGLGAGTLPMFLRGCLPFLD 565

Query: 298 VLGIEADGVVLDVARSHFGLVEDEFLQVRVGDAIQMIQDFA------------HQGDPDM 345
           +  +E D +V +VA  +FG   DE LQV +GD I+ I D A              G+ + 
Sbjct: 566 IKVVELDPLVEEVANKYFGFSTDEQLQVHLGDGIKFIDDIAVANSRATTQQLMSTGNENN 625

Query: 346 NFSAIMVDLDSSDAICGVSAPPLEMTKESILLASRTILHRDGAFILNVIPPAADGSFYKG 405
               ++VD+DSSD   G+S P     ++S LLA +  L   G FI+N++  ++  +  + 
Sbjct: 626 AVKILIVDVDSSDVSSGLSCPHANFVEDSFLLAVKKFLDEGGLFIINLVSRSS--AVREM 683

Query: 406 LIDVLRHVFSELYEINVSNGENFVLVATVSPVETILADSS 445
           ++  L+  F  LY +++    N VL AT  P E  L +++
Sbjct: 684 VVSRLKAAFEHLYSLHLEEDLNEVLFAT--PSERCLDNNN 721



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,108,809
Number of extensions: 552693
Number of successful extensions: 1167
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1164
Number of HSP's successfully gapped: 2
Length of query: 466
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 362
Effective length of database: 11,605,545
Effective search space: 4201207290
Effective search space used: 4201207290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)