Os08g0520400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0520400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.76 | 0.318 | 8.4 | 0.674 | 0.253 | -1.76 | -0.69 | 2.78 | -0.179 | 14.1 | 16 | 30 | -- | -- |
| 50.41 | 0.333 | 8.45 | 0.248 | 0.277 | -1.85 | 0.0624 | -- | -0.292 | 14.3 | 14.57 | 47 | -- | -- |
| 46.82 | 0.319 | 8.41 | 0.593 | 0.303 | -1.91 | -- | 2.33 | -0.184 | 14.9 | 14.98 | 48 | -- | -- |
| 50.12 | 0.33 | 8.45 | 0.259 | 0.277 | -1.87 | -- | -- | -0.285 | 14.6 | 14.38 | 19 | -- | -- |
| 49.33 | 0.327 | 8.43 | 0.507 | -- | -1.54 | -- | 2.16 | -0.255 | -- | 15 | 61 | -- | -- |
| 83.25 | 0.428 | 8.51 | -0.103 | 0.251 | -- | 0.196 | -- | -0.551 | 2.2 | -- | -- | -- | -- |
| 83.39 | 0.428 | 8.51 | -0.108 | 0.252 | -- | -- | -- | -0.553 | 2.29 | -- | -- | -- | -- |
| 53.19 | 0.34 | 8.47 | 0.188 | -- | -1.55 | -- | -- | -0.338 | -- | 12.84 | 24 | -- | -- |
| 51.73 | 0.335 | 8.46 | -- | 0.239 | -1.75 | -- | -- | -0.331 | 14.6 | 12.62 | 19 | -- | -- |
| 87.16 | 0.436 | 8.51 | -0.0978 | -- | -- | -- | -- | -0.546 | -- | -- | -- | -- | -- |
| 83.7 | 0.428 | 8.51 | -- | 0.25 | -- | -- | -- | -0.54 | 2.28 | -- | -- | -- | -- |
| 54.05 | 0.342 | 8.47 | -- | -- | -1.49 | -- | -- | -0.367 | -- | 9.488 | 30 | -- | -- |
| 87.41 | 0.436 | 8.51 | -- | -- | -- | -- | -- | -0.536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 4 | 43.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 25 | 44.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 42 | 45.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 44 | 45.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 45 | 45.03 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 52 | 45.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 60 | 45.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 110 | 45.69 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 118 | 45.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 126 | 45.83 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 141 | 45.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 171 | 46.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 183 | 46.25 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 188 | 46.27 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 229 | 46.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 258 | 46.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 286 | 46.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 312 | 46.96 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 323 | 47.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 371 | 47.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 392 | 47.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 397 | 47.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 406 | 47.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 493 | 47.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 498 | 47.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 515 | 48.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 553 | 48.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 562 | 48.19 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 564 | 48.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 569 | 48.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 635 | 48.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 779 | 48.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 865 | 48.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 931 | 48.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 21 |