Os04g0379300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Methyltransferase type 11 domain containing protein.
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Os04g0379300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Methyltransferase type 11 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.63 | 0.398 | 9.65 | 1.08 | 1.08 | -0.409 | 0.346 | 0.121 | 0.136 | 18 | 25.1 | 227 | -- | -- |
| 71.55 | 0.394 | 9.65 | 1.11 | 1.11 | -0.403 | 0.277 | -- | 0.131 | 18 | 25 | 235 | -- | -- |
| 71.74 | 0.394 | 9.64 | 1.13 | 1.11 | -0.404 | -- | -0.0738 | 0.142 | 18 | 24.9 | 228 | -- | -- |
| 71.75 | 0.395 | 9.65 | 1.11 | 1.11 | -0.403 | -- | -- | 0.134 | 18 | 25 | 235 | -- | -- |
| 116.01 | 0.502 | 9.57 | 1.21 | -- | -0.734 | -- | -0.541 | 0.164 | -- | 25.69 | 284 | -- | -- |
| 79.58 | 0.418 | 9.6 | 1.23 | 1.37 | -- | 0.425 | -- | 0.332 | 17.8 | -- | -- | -- | -- |
| 80.02 | 0.419 | 9.6 | 1.23 | 1.37 | -- | -- | -- | 0.334 | 17.8 | -- | -- | -- | -- |
| 110.11 | 0.489 | 9.67 | 0.965 | -- | -0.952 | -- | -- | -0.0623 | -- | 25.6 | 302 | -- | -- |
| 103.5 | 0.474 | 9.67 | -- | 0.971 | -0.562 | -- | -- | -0.00241 | 17.9 | 24.74 | 264 | -- | -- |
| 177.49 | 0.623 | 9.58 | 1.19 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 119.89 | 0.512 | 9.63 | -- | 1.35 | -- | -- | -- | 0.197 | 17.8 | -- | -- | -- | -- |
| 133.2 | 0.538 | 9.7 | -- | -- | -1.04 | -- | -- | -0.233 | -- | 25.26 | 287 | -- | -- |
| 214.68 | 0.684 | 9.61 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.48 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 2 | 60.88 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 6 | 61.76 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 8 | 62.03 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 9 | 62.11 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 10 | 62.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 12 | 62.37 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 14 | 62.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 15 | 62.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 17 | 62.67 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 28 | 62.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 31 | 62.95 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 34 | 63.07 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 47 | 63.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 49 | 63.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 50 | 63.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 53 | 63.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 54 | 63.32 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 55 | 63.32 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 58 | 63.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 59 | 63.33 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 60 | 63.33 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 65 | 63.42 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 67 | 63.43 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 73 | 63.55 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 75 | 63.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 76 | 63.59 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 77 | 63.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 82 | 63.69 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 84 | 63.69 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 85 | 63.69 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 88 | 63.69 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 89 | 63.69 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 91 | 63.69 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 94 | 63.69 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 105 | 63.72 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 107 | 63.74 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 109 | 63.74 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 122 | 63.83 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 143 | 63.87 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 146 | 63.89 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 152 | 63.92 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 186 | 64.10 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 190 | 64.16 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 192 | 64.16 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 202 | 64.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 208 | 64.26 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 233 | 64.38 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 236 | 64.39 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 241 | 64.44 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 244 | 64.46 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 253 | 64.51 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 305 | 64.64 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 310 | 64.66 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 325 | 64.72 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 327 | 64.73 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 334 | 64.80 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 348 | 64.87 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 355 | 64.89 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 358 | 64.92 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 361 | 64.94 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 396 | 65.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 444 | 65.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 505 | 65.50 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 507 | 65.52 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 508 | 65.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 511 | 65.52 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 513 | 65.52 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 514 | 65.52 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 515 | 65.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 524 | 65.56 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 533 | 65.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 538 | 65.61 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 560 | 65.65 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 566 | 65.68 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 14 |
| 568 | 65.69 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 590 | 65.78 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 592 | 65.79 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 668 | 65.98 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 689 | 66.02 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 750 | 66.17 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 769 | 66.22 | radiation | 1.0 | 30 | > th | dose independent | sin | 11 | NA |
| 784 | 66.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 790 | 66.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 795 | 66.26 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 817 | 66.32 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 17 |
| 820 | 66.32 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 822 | 66.33 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 824 | 66.33 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 827 | 66.35 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 847 | 66.39 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 848 | 66.39 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 882 | 66.44 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 891 | 66.46 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 900 | 66.48 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 928 | 66.56 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 934 | 66.57 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 946 | 66.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 956 | 66.61 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 984 | 66.68 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 5 |