BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0517900 Os08g0517900|AK064304
         (137 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0517900  Similar to 30S ribosomal protein S16                275   6e-75
Os09g0498100  Similar to 30S ribosomal protein S16                241   1e-64

>Os08g0517900 Similar to 30S ribosomal protein S16
          Length = 137

 Score =  275 bits (704), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MVVRIRLARFGCRNRPFYRLMAADSRSPRDGKHLEVLGYYDPLPGKDGGKRMGLKFDRVK 60
           MVVRIRLARFGCRNRPFYRLMAADSRSPRDGKHLEVLGYYDPLPGKDGGKRMGLKFDRVK
Sbjct: 1   MVVRIRLARFGCRNRPFYRLMAADSRSPRDGKHLEVLGYYDPLPGKDGGKRMGLKFDRVK 60

Query: 61  YWLSVGAQPSDPVERILYRAGILPPPPMLAMAHKGGPRDRRPIDPMTGRPLDLEGVTVVD 120
           YWLSVGAQPSDPVERILYRAGILPPPPMLAMAHKGGPRDRRPIDPMTGRPLDLEGVTVVD
Sbjct: 61  YWLSVGAQPSDPVERILYRAGILPPPPMLAMAHKGGPRDRRPIDPMTGRPLDLEGVTVVD 120

Query: 121 DSHTPKSGDGAPNEETA 137
           DSHTPKSGDGAPNEETA
Sbjct: 121 DSHTPKSGDGAPNEETA 137



>Os09g0498100 Similar to 30S ribosomal protein S16
          Length = 136

 Score =  241 bits (615), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/135 (88%), Positives = 126/135 (93%)

Query: 1   MVVRIRLARFGCRNRPFYRLMAADSRSPRDGKHLEVLGYYDPLPGKDGGKRMGLKFDRVK 60
           MVVRIRLARFGCRNRPFYR+MAADSRSPRDGKHLEVLGYY+PLPGKDGGKRMGLKFDRVK
Sbjct: 1   MVVRIRLARFGCRNRPFYRVMAADSRSPRDGKHLEVLGYYNPLPGKDGGKRMGLKFDRVK 60

Query: 61  YWLSVGAQPSDPVERILYRAGILPPPPMLAMAHKGGPRDRRPIDPMTGRPLDLEGVTVVD 120
           YWLSVGAQPSDPV+RIL+RAG+LPPPPMLAMA KGGPRDRRPI PMTGRPLDLEGVTVVD
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMLAMARKGGPRDRRPIHPMTGRPLDLEGVTVVD 120

Query: 121 DSHTPKSGDGAPNEE 135
           DS+ P+ G   P  E
Sbjct: 121 DSNVPEGGAEEPVSE 135



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.142    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,503,520
Number of extensions: 330146
Number of successful extensions: 872
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 872
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)