Os08g0517900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 30S ribosomal protein S16.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0517900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 30S ribosomal protein S16.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.63 | 0.36 | 10.1 | 0.981 | 0.873 | -1.53 | 0.24 | 0.099 | 0.327 | 22.4 | 29.23 | 254 | -- | -- |
| 58.64 | 0.357 | 10.1 | 0.995 | 0.877 | -1.54 | 0.243 | -- | 0.331 | 22.4 | 29.21 | 250 | -- | -- |
| 58.86 | 0.357 | 10.1 | 0.965 | 0.872 | -1.53 | -- | 0.144 | 0.328 | 22.4 | 29.3 | 252 | -- | -- |
| 58.89 | 0.357 | 10.1 | 0.989 | 0.873 | -1.54 | -- | -- | 0.331 | 22.4 | 29.26 | 252 | -- | -- |
| 85.67 | 0.431 | 10 | 0.834 | -- | -1.96 | -- | 0.45 | 0.331 | -- | 38.19 | 620 | -- | -- |
| 90.37 | 0.446 | 9.99 | 1.39 | 0.98 | -- | 0.305 | -- | 0.65 | 20.5 | -- | -- | -- | -- |
| 90.67 | 0.446 | 9.99 | 1.38 | 0.98 | -- | -- | -- | 0.65 | 20.5 | -- | -- | -- | -- |
| 85.82 | 0.431 | 10 | 0.911 | -- | -1.95 | -- | -- | 0.352 | -- | 37.17 | 627 | -- | -- |
| 83.23 | 0.425 | 10.1 | -- | 0.927 | -1.67 | -- | -- | 0.157 | 22.6 | 28.9 | 234 | -- | -- |
| 144.44 | 0.562 | 9.96 | 1.38 | -- | -- | -- | -- | 0.64 | -- | -- | -- | -- | -- |
| 140.82 | 0.555 | 10 | -- | 0.975 | -- | -- | -- | 0.496 | 20.6 | -- | -- | -- | -- |
| 105.6 | 0.479 | 10.1 | -- | -- | -2.28 | -- | -- | 0.209 | -- | 38.46 | 662 | -- | -- |
| 194.34 | 0.651 | 10 | -- | -- | -- | -- | -- | 0.488 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 3 | 56.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 19 | 57.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 30 | 58.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 42 | 58.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 53 | 58.82 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 73 | 59.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 76 | 59.41 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 109 | 59.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 118 | 59.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 145 | 60.04 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 155 | 60.07 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 166 | 60.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 181 | 60.20 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 226 | 60.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 4 |
| 255 | 60.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 472 | 61.12 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 505 | 61.18 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 21 |
| 522 | 61.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 582 | 61.29 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 697 | 61.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 794 | 61.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 840 | 61.58 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |