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Os09g0498100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 30S ribosomal protein S16.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.98 (0.0199) R2 : 0.825
β1 : 0.9 (0.0739) R2dD : 0.0612 R2D : 0.0832
β2 : 1.98 (0.0506) R2dC : 0.588 R2C : 0.562
β3 : -1.68 (0.0818) R2dE : 0.171 R2E : 0.183
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0094 (0.043) R2dN8 : 2.22e-05 R2N8 : -0.000509
σ : 0.371
deviance : 63.36
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C
peak time of C : 16.2
E
wheather : temperature
threshold : 31.27
memory length : 115
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.35
open length of G : 17.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.23 0.371 9.98 0.936 1.94 -1.62 0.723 -0.37 -0.0112 16.3 30.75 93 3.37 17.9
62.29 0.368 9.99 0.9 1.96 -1.62 0.663 -- -0.0171 16.3 30.9 109 3.38 17.7
63.45 0.371 9.98 0.911 1.96 -1.66 -- -0.177 -0.00791 16.3 30.82 108 3.38 17.7
63.36 0.371 9.98 0.9 1.98 -1.68 -- -- -0.0094 16.2 31.27 115 3.35 17.5
230.2 0.707 9.96 0.884 -- -2.05 -- -0.791 -0.157 -- 29.73 75 2.78 20.7
104.41 0.479 9.96 1.17 2.05 -- 1.19 -- 0.143 17 -- -- -- --
108 0.487 9.96 1.17 2.06 -- -- -- 0.149 17.1 -- -- -- --
201.38 0.661 10 0.489 -- -2.75 -- -- -0.341 -- 31.99 211 2.84 24
83.47 0.426 10 -- 1.93 -1.94 -- -- -0.141 16 30.84 144 3.02 17.5
330.4 0.849 9.94 1.1 -- -- -- -- 0.0963 -- -- -- -- --
144.24 0.562 9.99 -- 2.04 -- -- -- 0.0182 17.1 -- -- -- --
207.19 0.67 10.1 -- -- -2.89 -- -- -0.42 -- 31.78 217 2.11 24
362.23 0.888 9.96 -- -- -- -- -- -0.0256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.01 temperature 30 90 < th dose dependent rect. 3 18
2 64.24 temperature 30 90 < th dose dependent rect. 3 16
10 65.84 temperature 30 10 < th dose dependent rect. 4 18
14 66.49 temperature 15 270 > th dose dependent rect. 6 8
16 66.59 temperature 30 90 < th dose dependent rect. 3 10
17 66.59 temperature 15 270 > th dose dependent rect. 21 16
19 66.78 temperature 10 90 > th dose dependent rect. 8 19
42 68.10 temperature 10 10 > th dose dependent rect. 8 20
58 68.75 temperature 30 10 < th dose dependent rect. 4 8
66 69.16 temperature 10 270 > th dose dependent rect. 6 20
78 69.61 temperature 30 270 < th dose dependent rect. 1 10
85 69.90 temperature 15 10 > th dose dependent rect. 8 8
103 70.40 temperature 30 90 < th dose dependent sin 3 NA
107 70.47 temperature 15 90 > th dose dependent sin 3 NA
156 71.44 temperature 25 90 < th dose independent rect. 4 17
313 73.83 temperature 25 270 < th dose independent rect. 2 7
327 74.01 temperature 20 270 > th dose independent rect. 6 9
328 74.01 temperature 25 270 < th dose independent rect. 2 9
350 74.24 temperature 15 10 > th dose dependent rect. 22 18
353 74.29 temperature 25 270 > th dose independent rect. 22 15
500 75.89 temperature 25 90 < th dose independent rect. 4 9
564 76.48 temperature 25 90 < th dose independent rect. 4 11
634 77.04 temperature 25 270 < th dose independent sin 6 NA
672 77.30 temperature 25 270 > th dose independent sin 6 NA
712 77.55 temperature 30 270 < th dose dependent rect. 3 3
867 78.49 radiation 1 270 < th dose dependent rect. 3 8
884 78.60 radiation 1 270 < th dose dependent rect. 3 16
891 78.64 temperature 25 10 > th dose independent rect. 8 8
939 78.93 wind 5 270 < th dose independent rect. 3 3
984 79.21 temperature 20 270 > th dose dependent rect. 9 1
992 79.30 temperature 10 43200 > th dose independent rect. 10 7