BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0517300 Os08g0517300|AK069175
(647 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0517300 Zinc finger, C2H2-type domain containing protein 1050 0.0
Os06g0698859 Similar to C2H2 zinc-finger protein SERRATE (F... 633 0.0
Os02g0149600 Zinc finger, C2H2-type domain containing protein 510 e-144
>Os08g0517300 Zinc finger, C2H2-type domain containing protein
Length = 647
Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/647 (81%), Positives = 530/647 (81%)
Query: 1 MAEVARXXXXXXXXXXXTGGDRKRGRXXXXXXXXXXXXXXQVPHGSKXXXXXXXXXXXXX 60
MAEVAR TGGDRKRGR QVPHGSK
Sbjct: 1 MAEVARASASPPPASASTGGDRKRGRSSPSLPPPPPGPPPQVPHGSKRHRRDEGGGGGFD 60
Query: 61 XXXXXXXVGYDNPDDXXXXXXXXXXXXXXXXXXXXXXXXNFNRAPDWTDSGRGGWNDGPA 120
VGYDNPDD NFNRAPDWTDSGRGGWNDGPA
Sbjct: 61 RRRLGPGVGYDNPDDRRYGNDHGGAGGRGGYGDERGQGRNFNRAPDWTDSGRGGWNDGPA 120
Query: 121 NSRREGLMSYKQFMQELEDDVSPDEAQHRYEEYKSEYITTQKKAYFDLHKNDDWLKNKYH 180
NSRREGLMSYKQFMQELEDDVSPDEAQHRYEEYKSEYITTQKKAYFDLHKNDDWLKNKYH
Sbjct: 121 NSRREGLMSYKQFMQELEDDVSPDEAQHRYEEYKSEYITTQKKAYFDLHKNDDWLKNKYH 180
Query: 181 PTNLEIVMERRNELARTAANQFLQDLQNGSLDIGPGLTSSATNKSGNSVDDTDANGKKGK 240
PTNLEIVMERRNELARTAANQFLQDLQNGSLDIGPGLTSSATNKSGNSVDDTDANGKKGK
Sbjct: 181 PTNLEIVMERRNELARTAANQFLQDLQNGSLDIGPGLTSSATNKSGNSVDDTDANGKKGK 240
Query: 241 LGKSQDDLYYAAPKAHPVSSEPRRIRIDVELAQALICKLDSEKGIENNVLSGSDHDRAEK 300
LGKSQDDLYYAAPKAHPVSSEPRRIRIDVELAQALICKLDSEKGIENNVLSGSDHDRAEK
Sbjct: 241 LGKSQDDLYYAAPKAHPVSSEPRRIRIDVELAQALICKLDSEKGIENNVLSGSDHDRAEK 300
Query: 301 DKSHGSMGPIVIIRGSSAVKGLEGAELLDTLVTYLWRIHGVDYYGMSETNEPKGLRHVKA 360
DKSHGSMGPIVIIRGSSAVKGLEGAELLDTLVTYLWRIHGVDYYGMSETNEPKGLRHVKA
Sbjct: 301 DKSHGSMGPIVIIRGSSAVKGLEGAELLDTLVTYLWRIHGVDYYGMSETNEPKGLRHVKA 360
Query: 361 DSRTFNGASSNAAEWEKKLDSFWQDRIQGQDPMEILXXXXXXXXXXSEVLDPHVRKIRDE 420
DSRTFNGASSNAAEWEKKLDSFWQDRIQGQDPMEIL SEVLDPHVRKIRDE
Sbjct: 361 DSRTFNGASSNAAEWEKKLDSFWQDRIQGQDPMEILKAKDKIDAAASEVLDPHVRKIRDE 420
Query: 421 KYGWKYGCGAKGCTKLFHAPEFVQKHLKLKHADLVRELTSKVRENIYFDNYMSDPKAPGG 480
KYGWKYGCGAKGCTKLFHAPEFVQKHLKLKHADLVRELTSKVRENIYFDNYMSDPKAPGG
Sbjct: 421 KYGWKYGCGAKGCTKLFHAPEFVQKHLKLKHADLVRELTSKVRENIYFDNYMSDPKAPGG 480
Query: 481 MPIMQQPAPREKVRQRPPIESRLRDERGNRRFDRNDSPTHDGSSDNPDDAYDSYGDPVMH 540
MPIMQQPAPREKVRQRPPIESRLRDERGNRRFDRNDSPTHDGSSDNPDDAYDSYGDPVMH
Sbjct: 481 MPIMQQPAPREKVRQRPPIESRLRDERGNRRFDRNDSPTHDGSSDNPDDAYDSYGDPVMH 540
Query: 541 GAFPPDIPAPPVLMPVPGAGPLGPFIPAPPEVAMRMMRDQXXXXXXXXXXXXXXXXXXXX 600
GAFPPDIPAPPVLMPVPGAGPLGPFIPAPPEVAMRMMRDQ
Sbjct: 541 GAFPPDIPAPPVLMPVPGAGPLGPFIPAPPEVAMRMMRDQGGPPPFEPTGGPRPRRPGRG 600
Query: 601 XXXXXXXXXXXXXXXXXXHMHDPRKIRSYQDLDAPEDEVTVMDYRSL 647
HMHDPRKIRSYQDLDAPEDEVTVMDYRSL
Sbjct: 601 GLPMGGPSPILAAPLPPPHMHDPRKIRSYQDLDAPEDEVTVMDYRSL 647
>Os06g0698859 Similar to C2H2 zinc-finger protein SERRATE (Fragment)
Length = 723
Score = 633 bits (1632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/562 (57%), Positives = 406/562 (72%), Gaps = 23/562 (4%)
Query: 102 NRAPDWTDSGRGGWNDGPANSRREGLMSYKQFMQELEDDVSPDEAQHRYEEYKSEYITTQ 161
NRA DW DSG G NDGP ++REGLM+YKQF+Q LEDD+SP EA+ RY+EY++EYITTQ
Sbjct: 169 NRAADWADSGFGASNDGPGITQREGLMTYKQFIQVLEDDISPAEAEKRYQEYRTEYITTQ 228
Query: 162 KKAYFDLHKNDDWLKNKYHPTNLEIVMERRNELARTAANQFLQDLQNGSLDIGPGLTSSA 221
K+AYFDL+KNDD LK+KYHPTNL V++RRN+ + A F DLQNG+LD+GPG+T++A
Sbjct: 229 KRAYFDLNKNDDRLKDKYHPTNLSSVIDRRNDSCKATAKDFFHDLQNGTLDLGPGITAAA 288
Query: 222 TNKSGNSVDDTDANGKKGKLGKS---QDDLYYAAPKAHPVSSEPRRIRIDVELAQALICK 278
+ S + DD + K+ K G+ + D AP AHPVSSE RR+++D+E A AL+ K
Sbjct: 289 ASGSDGNSDDDGDSDKRRKHGRGSSKETDPLSGAPVAHPVSSESRRVQVDIEQALALVRK 348
Query: 279 LDSEKGIENNVLSGSDHDRAEKDKSH-GSMGPIVIIRGSSAVKGLEGAELLDTLVTYLWR 337
LD+EKGI N+LS DHD+++ DKSH GSMGPI+IIRG + VKGLEG ELLDTL+TYLWR
Sbjct: 349 LDTEKGIVGNILSSGDHDKSDVDKSHIGSMGPIIIIRGLTTVKGLEGVELLDTLLTYLWR 408
Query: 338 IHGVDYYGMSETNEPKGLRHVKADSRTFNGASSNAAEWEKKLDSFWQDRIQGQDPMEILX 397
IHGVDYYGMSETNE KG RHV+AD++T N + NAA+WEKK+D+FWQ+R++GQDPM IL
Sbjct: 409 IHGVDYYGMSETNEAKGSRHVRADNKTSNTTNINAADWEKKVDTFWQERLRGQDPMVILA 468
Query: 398 XXXXXXXXXSEVLDPHVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVQKHLKLKHADLVRE 457
EVL+P+VRKIRDEKYGWKYGCGAKGCTKLFHAPEFV KHL+LKH +LV E
Sbjct: 469 AKDKIDAAAVEVLEPYVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVHKHLRLKHPELVLE 528
Query: 458 LTSKVRENIYFDNYMSDPKAPGGMPIMQQPAPREKVRQRPPIESRLRDERGNRR-FDRND 516
LTSKVRE++YF NYM+DP APGG P+MQQ AP +K RQRP +++RLR +R NRR +DR +
Sbjct: 529 LTSKVREDLYFQNYMNDPNAPGGTPVMQQSAP-DKSRQRPGMDNRLRYDRANRREYDRAE 587
Query: 517 -----------SPTHDGSSDNPDDAYDSYGDPVMHGAFPPDIPAPPVLMPVPGAGPLGPF 565
SP+ DG+ D DA+ G + F P++PAPP+LMP+PGAGPLGPF
Sbjct: 588 RDGSRYGRGDRSPSLDGADDQMFDAFRGRGP---NAPFVPELPAPPILMPIPGAGPLGPF 644
Query: 566 IPAPPEVAMRMMRDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHMHDPRK 625
+PAPPE+AM M+R+Q DPR+
Sbjct: 645 VPAPPEIAMHMLREQ---GPPPPFEPNGPPHANPGVLGPMMGGPAPIITMPPSFRQDPRR 701
Query: 626 IRSYQDLDAPEDEVTVMDYRSL 647
+RSY DLDAP++EVTV+DYRSL
Sbjct: 702 LRSYNDLDAPDEEVTVLDYRSL 723
>Os02g0149600 Zinc finger, C2H2-type domain containing protein
Length = 666
Score = 510 bits (1313), Expect = e-144, Method: Compositional matrix adjust.
Identities = 273/555 (49%), Positives = 355/555 (63%), Gaps = 76/555 (13%)
Query: 103 RAPDWTDSGRGGWNDGPANSRREGLMSYKQFMQELEDDVSPDEAQHRYEEYKSEYITTQK 162
RAPD DSG +G +N+RR+GLM+YKQF Q+LEDDVSP EA+ RY+EYK+ YIT+QK
Sbjct: 178 RAPDCLDSGCDAPYNGQSNTRRKGLMTYKQFTQKLEDDVSPGEAESRYQEYKTSYITSQK 237
Query: 163 KAYFDLHKNDDWLKNKYHPTNLEIVMERRNELARTAANQFLQDLQNGSLDIGPGLTSSAT 222
+ YFD HKN+D LK+ YHPTNL V+ERRNEL + AA + DL++G+LD+GPG+T+
Sbjct: 238 QDYFDHHKNEDRLKDMYHPTNLLSVIERRNELCKAAAKNLILDLRSGTLDLGPGMTAGTA 297
Query: 223 NKSGNS-----VDDTDANGKKGKLGKS---QDDLYYAAPKAHPVSSEPRRIRIDVELAQA 274
+KSGN DD D + K+ + + + +L APKAHPVSS RRI+ D+ A
Sbjct: 298 SKSGNDSDGIPADDEDYHNKRRRHHRGPLEETELVSVAPKAHPVSSHYRRIQTDIHQTLA 357
Query: 275 LICKLDSEKGIENNVLSGSDHDRAEKDKSH-GSMGPIVIIRGSSAVKGLEGAELLDTLVT 333
L+ KLD EKGI N+L+ DH ++ DKS+ GS GP+VI+RG S VKGL+G ELLDTL+T
Sbjct: 358 LVKKLDEEKGIVGNILTTGDHTKSNGDKSYAGSTGPLVIVRGLSTVKGLDGFELLDTLLT 417
Query: 334 YLWRIHGVDYYGMSETNEPKGLRHVKADSRTFNGASSNAAEWEKKLDSFWQDRI-QGQDP 392
YLW +HG+DYYGMSE+ KGLRHV+AD++ N S+AA+WEKKLD FWQ+R+ G+DP
Sbjct: 418 YLWHVHGIDYYGMSESTNAKGLRHVRADTKNANMDKSSAADWEKKLDYFWQERLTNGKDP 477
Query: 393 MEILXXXXXXXXXXSEVLDPHVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVQKHLKLKHA 452
+ L +VL+ +V K++D+ YGW YGCGAKGC K+FHAP+FV KHL LKH
Sbjct: 478 LVALTAKDKIDASADKVLESYVTKVKDDNYGWTYGCGAKGCIKVFHAPDFVLKHLNLKHP 537
Query: 453 DLVRELTSKVRENIYFDNYMSDPKAPGGMPIMQQPAPREKVRQRPPIESRLRDERGNRRF 512
DLV +LTS+V+E+IYF NYM+DP APGG P+MQQ +P Q+ P S L
Sbjct: 538 DLVSKLTSRVQEDIYFQNYMNDPNAPGGTPVMQQQSP----EQQGPTPSEL--------- 584
Query: 513 DRNDSPTHDGSSDNPDDAYDSYGDPVMHGAFPPDIPAPPVLMPVPGAGPLGPFIPAPPEV 572
+P G G+F ++P PPVL+PVPGAGPLGPF+PAPPEV
Sbjct: 585 ----TPGAFGG----------------QGSF-VEMPTPPVLIPVPGAGPLGPFVPAPPEV 623
Query: 573 AMRMMRDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHMHDPRKIRSYQDL 632
M+MMR ++RSY+DL
Sbjct: 624 VMQMMRPVMPMYPPRPPNPR--------------------------------RLRSYKDL 651
Query: 633 DAPEDEVTVMDYRSL 647
DAP+DEVT++DYRSL
Sbjct: 652 DAPDDEVTLVDYRSL 666
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,216,088
Number of extensions: 944281
Number of successful extensions: 2962
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2951
Number of HSP's successfully gapped: 3
Length of query: 647
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 540
Effective length of database: 11,448,903
Effective search space: 6182407620
Effective search space used: 6182407620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)