Os08g0517300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os08g0517300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6.83 | 0.123 | 10.5 | 0.503 | 0.165 | -0.506 | -0.165 | 0.714 | 0.143 | 7.7 | 17.98 | 277 | -- | -- |
| 7.16 | 0.125 | 10.5 | 0.381 | 0.158 | -0.533 | -0.342 | -- | 0.107 | 6.72 | 15.38 | 337 | -- | -- |
| 6.9 | 0.122 | 10.5 | 0.51 | 0.16 | -0.504 | -- | 0.785 | 0.146 | 7.67 | 18 | 299 | -- | -- |
| 7.36 | 0.126 | 10.5 | 0.366 | 0.213 | -0.543 | -- | -- | 0.102 | 8.44 | 15.77 | 108 | -- | -- |
| 7.79 | 0.13 | 10.5 | 0.595 | -- | -0.596 | -- | 1.01 | 0.181 | -- | 19.76 | 403 | -- | -- |
| 10.55 | 0.152 | 10.5 | 0.258 | 0.306 | -- | -0.261 | -- | 0.026 | 6.21 | -- | -- | -- | -- |
| 10.72 | 0.153 | 10.5 | 0.255 | 0.305 | -- | -- | -- | 0.027 | 6.27 | -- | -- | -- | -- |
| 8.43 | 0.135 | 10.5 | 0.404 | -- | -0.638 | -- | -- | 0.129 | -- | 16 | 378 | -- | -- |
| 10.59 | 0.152 | 10.5 | -- | 0.239 | -0.33 | -- | -- | 0.0559 | 7.83 | 19.67 | 68 | -- | -- |
| 15.54 | 0.184 | 10.5 | 0.263 | -- | -- | -- | -- | 0.0336 | -- | -- | -- | -- | -- |
| 12.43 | 0.165 | 10.5 | -- | 0.309 | -- | -- | -- | -0.00137 | 6.23 | -- | -- | -- | -- |
| 12.25 | 0.163 | 10.5 | -- | -- | -0.431 | -- | -- | 0.0654 | -- | 20.85 | 366 | -- | -- |
| 17.37 | 0.195 | 10.5 | -- | -- | -- | -- | -- | 0.00445 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 6.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 2 | 6.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 3 | 6.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 6 | 6.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 8 | 6.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 12 | 6.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 27 | 6.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 29 | 6.92 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 38 | 6.93 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 42 | 6.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 51 | 6.97 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 68 | 6.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 74 | 7.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 101 | 7.05 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 103 | 7.05 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 105 | 7.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 119 | 7.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 127 | 7.07 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 11 |
| 136 | 7.07 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 160 | 7.09 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 168 | 7.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 235 | 7.13 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 257 | 7.14 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 281 | 7.15 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 282 | 7.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 387 | 7.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 415 | 7.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 454 | 7.21 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 583 | 7.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 628 | 7.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 708 | 7.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 722 | 7.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 801 | 7.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 833 | 7.29 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 897 | 7.30 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 899 | 7.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 912 | 7.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 955 | 7.31 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 958 | 7.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 960 | 7.31 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 961 | 7.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 1 |