BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0499200 Os08g0499200|AK120828
(750 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0499200 Similar to Chloride channel protein CLC-f (AtC... 1129 0.0
Os02g0720700 Similar to Chloride channel protein CLC-f (AtC... 842 0.0
Os01g0704700 Similar to Chloride channel protein CLC-f (AtC... 125 8e-29
>Os08g0499200 Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform
2
Length = 750
Score = 1129 bits (2921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/667 (85%), Positives = 573/667 (85%)
Query: 84 APPEWAXXXXXXXXXXATGICVAAFNRGVHIIHEWAWAGTPTEGAAWLRLQRLADTWHRI 143
APPEWA ATGICVAAFNRGVHIIHEWAWAGTPTEGAAWLRLQRLADTWHRI
Sbjct: 84 APPEWALLLVGCLLGLATGICVAAFNRGVHIIHEWAWAGTPTEGAAWLRLQRLADTWHRI 143
Query: 144 LLIPXXXXXXXXXXXXLLEIFEQIKQSLSSQREGVDFMAAIFPTIKAIQAAITLGTGCSL 203
LLIP LLEIFEQIKQSLSSQREGVDFMAAIFPTIKAIQAAITLGTGCSL
Sbjct: 144 LLIPVTGGVVVGMMHGLLEIFEQIKQSLSSQREGVDFMAAIFPTIKAIQAAITLGTGCSL 203
Query: 204 GPEGPSVDIGKSCAYGCAEMMENNRERRXXXXXXXXXXXXXXXXXXXXXGCFFAIETVLR 263
GPEGPSVDIGKSCAYGCAEMMENNRERR GCFFAIETVLR
Sbjct: 204 GPEGPSVDIGKSCAYGCAEMMENNRERRIALVAAGSAAGIASGFNAAVAGCFFAIETVLR 263
Query: 264 PLRAENSPPFTTAMIILASVISSTVSNVLLGEKAAFIVPTYELKSAAELPLYLILGMLCG 323
PLRAENSPPFTTAMIILASVISSTVSNVLLGEKAAFIVPTYELKSAAELPLYLILGMLCG
Sbjct: 264 PLRAENSPPFTTAMIILASVISSTVSNVLLGEKAAFIVPTYELKSAAELPLYLILGMLCG 323
Query: 324 VVSVAFRQLVVWFTKTFDLIRKKFSLPAVVCPXXXXXXXXXXXXRYPGILYWGFTNVDEI 383
VVSVAFRQLVVWFTKTFDLIRKKFSLPAVVCP RYPGILYWGFTNVDEI
Sbjct: 324 VVSVAFRQLVVWFTKTFDLIRKKFSLPAVVCPALGGLGAGLIALRYPGILYWGFTNVDEI 383
Query: 384 LHTGKSASAPGIWXXXXXXXXXXXXXXXCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEL 443
LHTGKSASAPGIW CKGSGLVGGLYAPSLMI EL
Sbjct: 384 LHTGKSASAPGIWLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEL 443
Query: 444 INSAIPGNTAVAHPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA 503
INSAIPGNTAVAHPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA
Sbjct: 444 INSAIPGNTAVAHPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA 503
Query: 504 IWVPSVVMSGNKEAFEATSPRHGYSSLLPPTDRNETDRRRPDRDDVELAILDDDPYRYGI 563
IWVPSVVMSGNKEAFEATSPRHGYSSLLPPTDRNETDRRRPDRDDVELAILDDDPYRYGI
Sbjct: 504 IWVPSVVMSGNKEAFEATSPRHGYSSLLPPTDRNETDRRRPDRDDVELAILDDDPYRYGI 563
Query: 564 NNEDMLLDDLKVSQAMSKQFIKVTPTVTIKEATRLMHDKQQNCVLVVDSEDFLEGIVTIG 623
NNEDMLLDDLKVSQAMSKQFIKVTPTVTIKEATRLMHDKQQNCVLVVDSEDFLEGIVTIG
Sbjct: 564 NNEDMLLDDLKVSQAMSKQFIKVTPTVTIKEATRLMHDKQQNCVLVVDSEDFLEGIVTIG 623
Query: 624 DIRRKGFESELSEDTPRNGANSSTLDANSSLVSSCLTRGFQYHGNERGLVTCFPDTDLST 683
DIRRKGFESELSEDTPRNGANSSTLDANSSLVSSCLTRGFQYHGNERGLVTCFPDTDLST
Sbjct: 624 DIRRKGFESELSEDTPRNGANSSTLDANSSLVSSCLTRGFQYHGNERGLVTCFPDTDLST 683
Query: 684 AKVLMEVKGIKQLPVVKXXXXXXXXXXXKVLGLLHYDSIGWCLREELERWKAIYQRENFQ 743
AKVLMEVKGIKQLPVVK KVLGLLHYDSIGWCLREELERWKAIYQRENFQ
Sbjct: 684 AKVLMEVKGIKQLPVVKRRAGRRNDGRRKVLGLLHYDSIGWCLREELERWKAIYQRENFQ 743
Query: 744 QSAVNGH 750
QSAVNGH
Sbjct: 744 QSAVNGH 750
>Os02g0720700 Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform
2
Length = 783
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/670 (65%), Positives = 485/670 (72%), Gaps = 10/670 (1%)
Query: 84 APPEWAXXXXXXXXXXATGICVAAFNRGVHIIHEWAWAGTPTEGAAWLRLQRLADTWHRI 143
APPEWA ATGICVAAFNRGVH+IHEWAWAGTP EGAAWLRLQRLADTWHRI
Sbjct: 121 APPEWALLLIGCLLGLATGICVAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRI 180
Query: 144 LLIPXXXXXXXXXXXXLLEIFEQIKQSLSSQREGVDFMAAIFPTIKAIQAAITLGTGCSL 203
LLIP LLEIF+Q+K Q++G++F+AAIFPT+ A+QAA+TLGTGCSL
Sbjct: 181 LLIPVTGGVVVGMMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSL 240
Query: 204 GPEGPSVDIGKSCAYGCAEMMENNRERRXXXXXXXXXXXXXXXXXXXXXGCFFAIETVLR 263
GPEGPSVDIGKSCA GC+EMMENNRERR GCFFAIETVLR
Sbjct: 241 GPEGPSVDIGKSCANGCSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLR 300
Query: 264 PLRAENSPPFTTAMIILASVISSTVSNVLLGEKAAFIVPTYELKSAAELPLYLILGMLCG 323
PL+AENSPPFTTAMIILASVISSTVSNVLLGE+ AFIVP YELKSAAELPLYLILGMLCG
Sbjct: 301 PLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCG 360
Query: 324 VVSVAFRQLVVWFTKTFDLIRKKFSLPAVVCPXXXXXXXXXXXXRYPGILYWGFTNVDEI 383
VSV F +LVVWF+ F +++++ P VV P +YPGILYWGFTNV+EI
Sbjct: 361 AVSVVFGRLVVWFSNFFGYLKERYDFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEI 420
Query: 384 LHTGKSASAPGIWXXXXXXXXXXXXXXXCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEL 443
LHTGKSASAPGIW CKGSGLVGGLYAPSLMI L
Sbjct: 421 LHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYL 480
Query: 444 INSAIPGNTAVAHPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA 503
INSA+PGN AVA PQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA
Sbjct: 481 INSAVPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA 540
Query: 504 IWVPSVV-MSGNKEAFEATSPRHGYSSLLPPTDRNETDRRRPDR-DDVELAILDDDPYRY 561
IWVPSVV S + E +PR GYSS L DRN RR D +D+EL L D Y
Sbjct: 541 IWVPSVVNQSKDGEPSRFRTPRRGYSS-LSSEDRNSKSWRRGDSVNDLELTSLRTD--NY 597
Query: 562 GINNEDMLLDDLKVSQAMSKQFIKVTPTVTIKEATRLMHDKQQNCVLVVDSEDFLEGIVT 621
NE+MLLDDLKVSQAMSK ++K+ + + EA +L+HDKQQNC LVVD EDFLEGIVT
Sbjct: 598 DTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVT 657
Query: 622 IGDIRRKGFESELSEDTPRNGANSSTLDANSSLVSSCLTRGFQYHGNERGLVTCFPDTDL 681
+GDIRR GF EL D+ +G + NSS +S CLTRGFQY GNERGL+TCFPDTDL
Sbjct: 658 LGDIRRMGF--ELHGDSFTSGDQLKPAE-NSSTISLCLTRGFQYEGNERGLLTCFPDTDL 714
Query: 682 STAKVLMEVKGIKQLPVVKXXXXXXXXXXXKVLGLLHYDSIGWCLREELERWKAIYQ-RE 740
+TAK LME +GIKQLPVVK K++ LLHYDSIG CLREE+E WKAIYQ +E
Sbjct: 715 TTAKNLMEARGIKQLPVVKRGVGHRTEGKRKLIALLHYDSIGHCLREEIENWKAIYQIKE 774
Query: 741 NFQQSAVNGH 750
+F A NGH
Sbjct: 775 DFHLIA-NGH 783
>Os01g0704700 Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform
2
Length = 312
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 10/215 (4%)
Query: 101 TGICVAAFNRGVHIIHEWAWAGTPTEGAAWLRLQRLADTWHRILLIPXXXXXXXXXXXXL 160
+G+ V FN VH I + W G P GA+WLR + + + W R++L+P +
Sbjct: 98 SGVSVVLFNLSVHEIRDLFWDGIPLRGASWLREESIGEIWQRVILVP-------VSGGII 150
Query: 161 LEIFEQIKQSLSSQREGV--DFMAAIFPTIKAIQAAITLGTGCSLGPEGPSVDIGKSCAY 218
+ +F ++ S+++ A P +KA+ A+ TLGTG SLGPEGPSV+IG S A
Sbjct: 151 VGVFNTLRSSIATNSNDTMSKIKGAFRPFLKAMAASFTLGTGNSLGPEGPSVEIGSSIAK 210
Query: 219 GCAEMMENNRERRXXXXXXXXXXXXXXXXXXXXXGCFFAIETVLRP-LRAENSPPFTTAM 277
G + + ++ GCFFA+E+VL P +S +T M
Sbjct: 211 GFGNVFKLEGGKKLSLVAAGSAAGIASGFNAAVAGCFFAVESVLWPTSVDSSSLSNSTPM 270
Query: 278 IILASVISSTVSNVLLGEKAAFIVPTYELKSAAEL 312
+IL++VI+S VS + LG AF VP Y+ +S E+
Sbjct: 271 VILSAVIASVVSEIGLGSDPAFTVPEYDFRSPTEI 305
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,947,712
Number of extensions: 713234
Number of successful extensions: 1406
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1398
Number of HSP's successfully gapped: 3
Length of query: 750
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 642
Effective length of database: 11,396,689
Effective search space: 7316674338
Effective search space used: 7316674338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)