BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0493100 Os08g0493100|AK121365
(449 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0493100 Cyclin-like F-box domain containing protein 850 0.0
Os08g0493200 170 2e-42
Os08g0492900 150 1e-36
Os12g0492900 Cyclin-like F-box domain containing protein 145 5e-35
Os12g0494500 129 4e-30
Os12g0493200 117 1e-26
Os12g0493800 110 2e-24
Os08g0493450 108 8e-24
Os12g0493100 97 2e-20
Os09g0517800 Cyclin-like F-box domain containing protein 69 1e-11
>Os08g0493100 Cyclin-like F-box domain containing protein
Length = 449
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/430 (95%), Positives = 410/430 (95%)
Query: 1 MEEQETSIGDLHTDAFVEIXXXXXXXXXXXXXXXXXXXXNVINSRAPVWRGHAKTLAFVY 60
MEEQETSIGDLHTDAFVEI NVINSRAPVWRGHAKTLAFVY
Sbjct: 1 MEEQETSIGDLHTDAFVEILRRVAPSARRRLRLVCRRWRNVINSRAPVWRGHAKTLAFVY 60
Query: 61 HRPGPATAAYAIDGLEEDDEGCYRKLWDAAADPSLPAIYSRLRMIGSCNGLLCLYDEGVT 120
HRPGPATAAYAIDGLEEDDEGCYRKLWDAAADPSLPAIYSRLRMIGSCNGLLCLYDEGVT
Sbjct: 61 HRPGPATAAYAIDGLEEDDEGCYRKLWDAAADPSLPAIYSRLRMIGSCNGLLCLYDEGVT 120
Query: 121 GDIALLNPVTGETLDVAGPPGHRLRRQEPYGHVPYGEAFSFTYHEATERYKIVHLAVSDG 180
GDIALLNPVTGETLDVAGPPGHRLRRQEPYGHVPYGEAFSFTYHEATERYKIVHLAVSDG
Sbjct: 121 GDIALLNPVTGETLDVAGPPGHRLRRQEPYGHVPYGEAFSFTYHEATERYKIVHLAVSDG 180
Query: 181 RLEAVEVLTLVDGAPSPSWRRVAAPAGSSCWLPAGVVSDGQATYWINHGGGDRLMSFDLT 240
RLEAVEVLTLVDGAPSPSWRRVAAPAGSSCWLPAGVVSDGQATYWINHGGGDRLMSFDLT
Sbjct: 181 RLEAVEVLTLVDGAPSPSWRRVAAPAGSSCWLPAGVVSDGQATYWINHGGGDRLMSFDLT 240
Query: 241 DERVATITSLPVAAKNLNAGCLRKARGRLCVGNRIHHDYQNNTEIDEMWLLERDGCESLE 300
DERVATITSLPVAAKNLNAGCLRKARGRLCVGNRIHHDYQNNTEIDEMWLLERDGCESLE
Sbjct: 241 DERVATITSLPVAAKNLNAGCLRKARGRLCVGNRIHHDYQNNTEIDEMWLLERDGCESLE 300
Query: 301 RWYCRFYLTTRLCMEVQQVVGPHFTQGEHILAHRHGSLYVHRCVSSATRPQCSVAQIHEH 360
RWYCRFYLTTRLCMEVQQVVGPHFTQGEHILAHRHGSLYVHRCVSSATRPQCSVAQIHEH
Sbjct: 301 RWYCRFYLTTRLCMEVQQVVGPHFTQGEHILAHRHGSLYVHRCVSSATRPQCSVAQIHEH 360
Query: 361 WPYHEPMFTCGHASNIRAFSYIETTEPLNVYQCNGGSKIGSVVNNDEEMATGKTTSLGQM 420
WPYHEPMFTCGHASNIRAFSYIETTEPLNVYQCNGGSKIGSVVNNDEEMATGKTTSLGQM
Sbjct: 361 WPYHEPMFTCGHASNIRAFSYIETTEPLNVYQCNGGSKIGSVVNNDEEMATGKTTSLGQM 420
Query: 421 LTSMFNDLPS 430
LTSMFNDLPS
Sbjct: 421 LTSMFNDLPS 430
>Os08g0493200
Length = 384
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 148/407 (36%), Positives = 196/407 (48%), Gaps = 47/407 (11%)
Query: 8 IGDLHTDAFVEIXXXXXXXXXXXXXXXXXXXXNVINSRAPVWRGHAKTLAFVYHRPGPAT 67
IG + +DA VEI ++++ R P R AK L V+
Sbjct: 6 IGHIPSDAVVEILVRLPPSSRRRCRLVCRHWRDLVDDRTPEMRSRAKALVLVH------A 59
Query: 68 AAYAIDGLEEDDEGCYRKLWDAAADPSLPAIYSRLRMIGSCNGL--LCLYDEGVTGDIAL 125
A+ D L E G R+L LP + ++G+CNGL LC + G AL
Sbjct: 60 VAHVFDDLPE---GRRRQL--------LPNCRG-VDIVGTCNGLVFLCEWSRG----FAL 103
Query: 126 LNPVTGETLDVAG-PPGHRLRRQEPYGHVPYGEAFSFTYHEATERYKIVHLAVSDGRLE- 183
+NP TGE +D AG PP R +EP + P A++F YH T RYKIVH + D R E
Sbjct: 104 VNPFTGERVDGAGVPPPPCPRGEEPPFYQPTHAAYAFGYHPTTGRYKIVHFPIQDRRTET 163
Query: 184 --AVEVLTL-VDGAPSPSWRRVAAPA-GSSCWLPAGVVSDGQATYWINHGGGDRLMSFDL 239
AV VLTL + S SWR V PA GSS GVVS +TYWI +R+MS DL
Sbjct: 164 FDAVRVLTLGAEEDASTSWRDVPMPAGGSSRRGSCGVVSVDGSTYWITR-DTERVMSLDL 222
Query: 240 -TDERVATITSLPVAAKNLNAGC---LRKARGRLCVGNRIHHDYQNNTEIDEMWLLERDG 295
DERVA +T L + A+ GC L RGRL V + +T++ W+LE G
Sbjct: 223 GDDERVAAVTPL-LPARTAGPGCTCKLTDVRGRLGVAVSVSMATSTDTDV---WVLEGGG 278
Query: 296 CESLERWYCRFYLTTRLCMEVQQVVGPHFTQGEHILAHR-----HGSLYVHRCVSSATRP 350
ER + R Y + R+ QQ+ PHF GEH+L G LY HR R
Sbjct: 279 GGGGERRWSRRY-SVRVHGVEQQLAWPHFAHGEHVLTTSTHCSIRGFLYAHRLSDDGRRR 337
Query: 351 -QCSVAQIHEHWPYHEP-MFTCGHASNIRAFSYIETTEPLNVYQCNG 395
QCS +I+E P F + ++R F+Y+ETTEP++V+ G
Sbjct: 338 LQCSAVRINERRPGKVVGSFGACYRRDLRTFAYVETTEPVSVFSLRG 384
>Os08g0492900
Length = 388
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 185/407 (45%), Gaps = 46/407 (11%)
Query: 4 QETSIGDLHTDAFVEIXXXXXXXXXXXXXXXXXXXXNVINSRAPVWRGHAKTLAFVYHRP 63
+ + D TD V+I + I+ R P K L FV
Sbjct: 10 ENVGVVDFPTDVLVDILSQLPTSSRRLCRLVCRRWRDTIDKRTPERDVRTKMLTFVKGLD 69
Query: 64 GPATAAYAIDGLEEDDEGCYRKLWDAAADPSLPAIYSRLRMIGSCNGLLCLYDEGVTGDI 123
A+A Y +D + G +R++W ++ + +IG+ NGL+C+ D G TG +
Sbjct: 70 NEASA-YVVD----EARGRHRRVWTSSCS---------VDVIGTRNGLICVLDGG-TGAV 114
Query: 124 ALLNPVTGETLDVAGPPGHRLRRQEPYGHVPYGEAFSFTYHEATERYKIVHLAV---SDG 180
+ NP T E+L V PP + + EA+ F +H AT RY +VH+ G
Sbjct: 115 TVANPATRESLSVPPPPPRQAGLLPCFPDARTHEAYGFAFHPATLRYAVVHVPCYFNKSG 174
Query: 181 RLEAVEVLTLVDG---APSPSWRRVAAPAGSSCWLPAGVVSDGQATYWINHGGGDRLMSF 237
+AV+V TL G AP PSWR V P S + P GV YWI G +MS
Sbjct: 175 TFDAVQVYTLGRGGRGAP-PSWRSVPTPGASGRFQPGGVACVDGVAYWITAGTPAAIMSL 233
Query: 238 DLTDERVATITSLPVAAKNLNAGC-----LRKARGRLCVGNRIHHDYQNNTEIDEMWLLE 292
DL D RVA + P + GC L + RGRLCV + + + T+ E+W +E
Sbjct: 234 DLKDNRVAPVKWSP---ETPGRGCRCSYRLTEMRGRLCVAVTV-EETEKPTKRVEVWWME 289
Query: 293 --RDGCESLERWYCRFYLTTRLCMEVQQVVGPHFTQGEHIL----AHRHGSLYVHRCVSS 346
RD +RW R+ + L Q V+ P F GE++L + +L+ H+ VS
Sbjct: 290 STRD-----QRWTRRYNIM--LETPKQHVMWPLFAHGENVLTVAQVFKEYNLHKHK-VSD 341
Query: 347 ATRPQCSVAQIHEHWPYHEPM-FTCGHASNIRAFSYIETTEPLNVYQ 392
QCS+ +I + P E M + + I F+Y+ET+EPL +Y+
Sbjct: 342 KRSSQCSMVKIWKKKPGVEIMNYGVADHTGISTFAYMETSEPLEIYK 388
>Os12g0492900 Cyclin-like F-box domain containing protein
Length = 423
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 167/369 (45%), Gaps = 36/369 (9%)
Query: 53 AKTLAFVYHR--PGPATAAYAIDGLEEDDEGCYRKLWDAAADPSLPAIYSRLRMIGSCNG 110
AK L F+ G A D L G R++W+ + S ++G+CNG
Sbjct: 56 AKPLTFLKRSVDSGRPATARVFDDLAGGGLGGSREIWNGGGGGDGVSGSSP-DIVGTCNG 114
Query: 111 LLCLYDEGVT--GDIALLNPVTGETLDVAGPPGHRLRRQEPYGHVPYGEAFSFTYHEATE 168
LLCL+ G G+I L+NPVTGE+L + PP R + P E SF YH T
Sbjct: 115 LLCLWHCGSDSGGEITLVNPVTGESLAIPPPPPPSPRWRSHTTEGPEAERLSFAYHPLTG 174
Query: 169 RYKIVHL--AVSDGRLE-----AVEVLTLVDGAPSPSWRRVAAPAGSSCWLPAGVVSDGQ 221
RY IVH A DG + AVEVLTL S SWR VAAP GS C L G+VS
Sbjct: 175 RYSIVHFPAAFCDGGGDNLADPAVEVLTLGGAGASASWREVAAPPGSRCCLALGIVSVDG 234
Query: 222 ATYWINHGGGDRLMSFDLTDERVATITSLPVA-AKNLNAGC---LRKARGRLCVGNRIHH 277
ATYW+ G R+MS D ERV + LP A A L++ L + GRL V +H
Sbjct: 235 ATYWVTKDG--RIMSLDHEHERVTAVLPLPPAIAGELDSWWSTRLTEVAGRLGVAITSNH 292
Query: 278 DYQNNTEIDEMWLLERDGCESLERWYCRFYLTTRLCMEVQQVVGPHFTQGEHILA----- 332
+ + E+W+L DG W R Y L Q++ PHF GE++L
Sbjct: 293 TTPSKYNV-EVWVL--DGARGKMTWSHR-YTIQDLQFSYQEIAWPHFAYGENVLTILDSD 348
Query: 333 HRHGSLYVHRCVSSATRPQCSVAQIHEHWPYHEPMFTCGHAS---------NIRAFSYIE 383
H LY H R + + + E + + ++ FSY+E
Sbjct: 349 HLRNQLYTHWLWPHKNRTSVATGDVVKGTLVEEFVIDPENVKILSLIDPEIHVNMFSYVE 408
Query: 384 TTEPLNVYQ 392
T EPLN+Y+
Sbjct: 409 TNEPLNIYK 417
>Os12g0494500
Length = 421
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 128/401 (31%), Positives = 175/401 (43%), Gaps = 82/401 (20%)
Query: 40 NVINSRAPVWRGHAKTLAFV---YHRPGPATAAYAIDGLEEDDEGCYRKLWDAAADPSLP 96
++++ R P AK LAF H P ++AY D + C R++W A
Sbjct: 52 DLLDERTPRIHARAKPLAFFTRGRHAAQPGSSAYVYDDDLSGEFVCCRQVWCGGA----- 106
Query: 97 AIYSRLRMIGSCNGLLCLYDEGVTGDIALLNPVTGETLDVAGPPGHRLRRQEPYGHVPYG 156
A+ + L M G NG+L + DE TGDI L NP TGETL V PP RL R + +
Sbjct: 107 AVAAGLIMFGCRNGILAMLDER-TGDITLANPATGETLAVPPPP--RLPRNCAF----HR 159
Query: 157 EAFSFTYHEATERYKIVHLAVSD--GRLEAVEVLTLVDGAPSPSWRRVAA---PAGSSCW 211
A F YH T RYK+VHL V VEV TL + +WR V A PAGSSC
Sbjct: 160 TAVGFGYHPTTGRYKVVHLPVRGEASAFGVVEVFTLRGS--NATWREVVAAPPPAGSSCD 217
Query: 212 LPAGVVSDGQATYWINHGGGDR-LMSFDLTDERVATITSLP-VAAKNLNAGCLRKARGRL 269
+ G+VS A YWI GGG +MSFDL ERVA +TSLP +A + L AG G +
Sbjct: 218 VDCGLVSVDGAMYWIAMGGGAAAIMSFDLEHERVAHVTSLPAMARRKLAAGRCCHLTGDI 277
Query: 270 CVGNRIHHD-----------------------------------YQNNTEIDEMWLLERD 294
+H+ + +T E+W+L +
Sbjct: 278 VGALMVHYGVVVAQAPTAPTLSPPLLTVIQRRLAVAITASDVTVIETDTPTVEVWVLHKG 337
Query: 295 GCESLERWYCRFYLTTRLCMEVQQVVGPH--FTQGEH--ILAHR--HGSLYVHRCVSSAT 348
+RW + Y + +Q+ P+ F+ GEH I+ R + S+ HR
Sbjct: 338 --RRKQRWINQ-YRVVGMDTYHKQLTRPYFFFSHGEHYMIITWRFPYISMRAHRLKKGDG 394
Query: 349 RPQCSVAQIHEHWPYHEPMFTCGHASNIRAFSYIETTEPLN 389
P+ M ++I+ FSY+ETTE L
Sbjct: 395 EPK--------------EMALLEQGTSIQVFSYVETTETLR 421
>Os12g0493200
Length = 423
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 155/353 (43%), Gaps = 78/353 (22%)
Query: 40 NVINSRAP-VWRGHAKTLAFVY---HRPGPATAAYAIDG-----------LEEDDEGCYR 84
+V++ P V R AK LAF + P A + + I G +ED++G R
Sbjct: 32 DVVDEIEPEVQRRRAKPLAFFKNGCYEPPSAFSLHDIAGDCDVTSLFREEKQEDNDGGDR 91
Query: 85 KLWDAAADPSLPAIYSRLRMIGSCNGLLCLY-DEGVTGD--IALLNPVTGETLDVAGPPG 141
+ A Y+ M+GSCNGL+CL+ D +G I + NPVTGETL + PP
Sbjct: 92 DFF---------ARYNNDDMVGSCNGLICLWLDRSYSGGCGIFVTNPVTGETLHIPSPP- 141
Query: 142 HRLRRQEPYGHVPYGEAFSFTYHEATERYKIVHLAVSDGRLE------------------ 183
L H F YH T +YKIVH + GR++
Sbjct: 142 --LETMATSSHRRTAGPLCFGYHPTTGKYKIVHFPSNGGRVDDVTLGGTTSAAAAAAASS 199
Query: 184 -------AVEVLTLVDGAPSPSWRRVAAPAGSSCWLPAGVVSDGQATYWINHGGGDRLMS 236
V VLTL DGA SWR V P S C + GVVS ATYW+ G +MS
Sbjct: 200 FPSRHGGVVNVLTLGDGA--ASWRAVGVPPWSLC-IAWGVVSVDGATYWVAE--GREIMS 254
Query: 237 FDLTDERVATIT--------SLPVAAKNLNAGC-LRKARGRLCVGNRIHHDYQNNTEIDE 287
FDL ERVA + LPV+ +A C L GRL V IH Q N+ E
Sbjct: 255 FDLEHERVAAVAPLPAMSRCRLPVSMAKEDACCQLTDVGGRLGVSIAIH---QRNSICIE 311
Query: 288 MWLLE-RDGCESLERWYCRFYLTTRLCMEVQQVVGPHFTQGEHILAHRHGSLY 339
+WLLE R G + +W T + Q++ P+F G +L + + ++
Sbjct: 312 VWLLEGRGGKQKWSKWR-----TIQGLQPTQKIGRPYFAYGNCVLTNIYREMF 359
>Os12g0493800
Length = 312
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 135/299 (45%), Gaps = 30/299 (10%)
Query: 11 LHTDAFVEIXXXXXXXXXXXXXXXXXXXXNVINSRAPVWRGH-AKTLAFVY----HRPGP 65
L TDAFVEI +V+++R P + AK L F H P P
Sbjct: 9 LPTDAFVEILLRLPPSARRRSRLVCRRWRDVVDARTPEGQSRRAKALVFFLNRGSHSPEP 68
Query: 66 ATAAYAIDGLEE-DDEGCYRKLWDAAADPSLPAIYSRLRMIGSCNGLLCLYDEGVTGDIA 124
+A+ D L G R++W++ + + L M+G CNG++ L++EG TG +
Sbjct: 69 RCSAHVFDDLSPPSSSGGGREIWNSGTGTA-----AELAMVGCCNGVIALWEEG-TGRLT 122
Query: 125 LLNPVTGETLDVAGPPGHRLRRQEPYGHVPYGEAFSFTYHEATERYKIVHLAVSD----- 179
L+NP TGETL V PP +R+ + SF YH T RYKIVHL D
Sbjct: 123 LVNPSTGETLAVPPPPRLPPKRRHRRAPLVV-SCLSFGYHPITGRYKIVHLPADDAMAAA 181
Query: 180 ------GRLEAVEVLTLVD---GAPSPSWRRVAAPAGSSCWLPAGVVSDGQATYWINHGG 230
+ VEV TL D +W+ VAAP GSSC + GV S A YW+
Sbjct: 182 SSSSWCSPFDVVEVFTLGDVGVAGDGATWQEVAAPPGSSCHVRLGVFSLDGAAYWV--AA 239
Query: 231 GDRLMSFDLTDERVATITS-LPVAAKNLNAGCLRKARGRLCVGNRIHHDYQNNTEIDEM 288
+ +MSFDL ERVA + + LP G L GRL V D T I E+
Sbjct: 240 DNAVMSFDLEHERVAAVEAPLPAMPLGTWLGALAVVGGRLGVAVMGCADSYPTTTIVEV 298
>Os08g0493450
Length = 281
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 118/253 (46%), Gaps = 33/253 (13%)
Query: 40 NVINSRAPVWRGHAKTLAFVYHRPGPATAAYAIDGLEEDDEGCYRKLWDAAADPSLPAIY 99
+ ++SRAP G AKTL + A Y D + G R++ P+
Sbjct: 43 DAVDSRAPARPGPAKTLVVAHG------AGYVFDDVPG---GSSREI---------PSPC 84
Query: 100 SRLRMIGSCNGLLCLYDEGVTGDI---ALLNPVTGETLDVAGPPGHRLRRQEPYGHVPYG 156
++G+CNGLLC+ G L NPVTGE L V P R P+ +
Sbjct: 85 PLANIVGTCNGLLCVVGTGAGFTTGGFVLSNPVTGEALHVPLP----TRIGAPWRRWEHN 140
Query: 157 EAFSFTYHEATERYKIVHLAVSD---GRLEAVEVLTLVDGAPSPSWRRVAAPAGSSCWLP 213
E +SF +H T YKIV V D G +AV+V TL + A SWR V APAGSS
Sbjct: 141 EYYSFAHHPTTGLYKIVPFPVDDRWTGSFDAVQVYTLGEAA---SWRDVPAPAGSSRRKS 197
Query: 214 AGVVSDGQATYWINHGGGDRLMSFDLTDERVATITSLPVAAKNLNAGC-LRKARGRLCVG 272
G+VS TYW+ +++MS DL DER+ + +LP A C L +A GRL V
Sbjct: 198 CGLVSVDGFTYWVAM-DTEKVMSLDLKDERITVVITLPAPASEPGRQCRLTEAHGRLAVA 256
Query: 273 NRIHHDYQNNTEI 285
+ TE+
Sbjct: 257 AIVTQPTNTKTEV 269
>Os12g0493100
Length = 261
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 104/210 (49%), Gaps = 24/210 (11%)
Query: 53 AKTLAFVYHRPGPATAAYAIDGLEEDDEGCYRKLWD----AAADPSLPAIYSRL------ 102
AK LA + R +A+ +DGL R ++ Y R
Sbjct: 61 AKPLAVLKDRHSRTLSAFVVDGLPPAPRCTTRCIFQHVDGGGGGHHHRHRYDRWPNNVGD 120
Query: 103 RMIGSCNGLLCLYDEGVTGD--IALLNPVTGETLDVAGPPGHRLRRQEPYGHVPYGEAFS 160
+++G+CNG++ L G + LLN TGE L V PP + +E G A S
Sbjct: 121 QVVGTCNGIVLLAHSRYVGSHTLVLLNRATGERLVVQPPP----KAKEILGG---SAALS 173
Query: 161 FTYHEATERYKIVHLAVSDGR--LEAVEVLTLVDG-APSPSWRRVAAPAGSSCWLPAGVV 217
F YH T YK+VHL VS + L E+LT+ DG + SWR+V APAGS+C+L GVV
Sbjct: 174 FPYHPLTGEYKVVHLPVSSWKRTLAVAELLTVGDGDGGAASWRQVPAPAGSTCYLSWGVV 233
Query: 218 SDGQATYWINHGGGDRLMSFDLTDERVATI 247
S ATYW+ GG ++MS DL E +A +
Sbjct: 234 SVDGATYWVGKGG--KIMSLDLEHEIIAEV 261
>Os09g0517800 Cyclin-like F-box domain containing protein
Length = 408
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 118/277 (42%), Gaps = 53/277 (19%)
Query: 79 DEGCYRKLWDAAADPSLPAIYSRLRMIGSCNGLLCLYDEGVTGDIALLNPVTGETLDVAG 138
DE + +WD +P I + GS NGL+CLY T IA N TGE L +A
Sbjct: 92 DEAWSQSIWD------VPVIGPDDFLCGSSNGLVCLYTHTTTIKIA--NLATGECLHLAK 143
Query: 139 PPGHRLRRQEPYGHVPYGEAFSFTYHEATERYKIVHLAVS--DGRLEA-------VEVLT 189
P + H + +SF +H T+ YK+ H S + R+ A V+V T
Sbjct: 144 PA-----KNLTDDHFSF---YSFGFHPLTKEYKVTHFLASSHETRIRAKVDSFDGVQVYT 195
Query: 190 LVDGAPSPSWRRVAAPAGSS--CWLPAGVVSDGQATYWINHGGGDR----LMSFDLTDER 243
L D W+ + AP S C +GVV+ YW+ G +MSFDL E
Sbjct: 196 LGD----EKWKYIGAPEALSLNCVKNSGVVNVDGTMYWLTEDQGTSWHHAVMSFDLNKES 251
Query: 244 VATITSLPVAAKNLNAG------CLRKARGRLCVGNRIHHDYQN---NTEIDEMWLLERD 294
I LP AA +A +++ G++C+ D Q EI ++W L+ +
Sbjct: 252 FGRI-QLPTAALEDSAFYGPRRYWIKEIDGKVCIATCQTSDNQPILLRGEI-QIWALDIN 309
Query: 295 GCESLERWYCRFYLTTRLCMEVQQVVGPHFTQGEHIL 331
LE+ + + Y+ Q + GP+ + I+
Sbjct: 310 ----LEQKWIQKYIIQP---SAQHIPGPNIVHRDKIV 339
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,476,503
Number of extensions: 750776
Number of successful extensions: 1761
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1725
Number of HSP's successfully gapped: 11
Length of query: 449
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 345
Effective length of database: 11,605,545
Effective search space: 4003913025
Effective search space used: 4003913025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)