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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0492900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0138) R2 : 0.00174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.026 (0.0291) R2dN8 : 0.00225 R2N8 : 0.00174
σ : 0.261
deviance : 31.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.37 0.25 2.91 -0.025 0.0669 0.507 -0.0689 -1.69 0.052 4.75 0.4902 2997 -- --
30.13 0.256 2.89 -0.0438 0.0623 0.303 -0.0841 -- 0.0396 4.85 0.4871 3261 -- --
28.38 0.248 2.91 -0.0241 0.0666 0.505 -- -1.69 0.0521 4.7 0.4965 2997 -- --
30.14 0.256 2.89 -0.0429 0.0552 0.297 -- -- 0.0444 4.86 0.5 3290 -- --
28.61 0.249 2.91 -0.0222 -- 0.499 -- -1.65 0.0533 -- 0.498 2996 -- --
30.98 0.261 2.89 0.0121 0.0608 -- -0.0991 -- 0.0258 6.47 -- -- -- --
31 0.261 2.89 0.0105 0.0609 -- -- -- 0.026 6.05 -- -- -- --
30.31 0.256 2.89 -0.0402 -- 0.302 -- -- 0.0472 -- 0.4906 3290 -- --
30.19 0.256 2.89 -- 0.056 0.282 -- -- 0.0447 4.85 0.4997 3293 -- --
31.2 0.261 2.9 0.0123 -- -- -- -- 0.0274 -- -- -- -- --
31.01 0.26 2.89 -- 0.061 -- -- -- 0.0248 6.04 -- -- -- --
30.35 0.257 2.89 -- -- 0.282 -- -- 0.0499 -- 0.4797 3290 -- --
31.2 0.261 2.9 -- -- -- -- -- 0.026 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.17 wind 1.0 10 < th dose dependent rect. 2 1
3 27.51 wind 1.0 10 < th dose independent rect. 2 1
6 27.57 wind 1.0 30 < th dose independent rect. 24 3
12 27.60 humidity 90.0 10 > th dose independent rect. 2 1
15 27.61 temperature 25.0 10 < th dose independent rect. 2 1
17 27.62 temperature 10.0 10 > th dose dependent rect. 2 1
19 27.62 humidity 50.0 10 > th dose dependent rect. 2 1
22 27.62 atmosphere 1010.0 30 < th dose dependent rect. 2 1
24 27.63 temperature 10.0 10 > th dose independent rect. 2 1
28 27.63 humidity 50.0 10 > th dose independent rect. 2 1
33 27.63 atmosphere 995.0 10 > th dose independent rect. 2 1
34 27.63 atmosphere 1010.0 10 < th dose independent rect. 2 1
36 27.63 radiation 1.0 10 < th dose independent rect. 2 1
41 27.63 precipitation 0.1 10 < th dose independent rect. 2 1
42 27.63 temperature 10.0 10 > th dose independent rect. 3 23
48 27.63 radiation 1.0 10 < th dose dependent rect. 2 1
53 27.63 precipitation 0.1 10 < th dose dependent rect. 2 1
65 27.64 atmosphere 1005.0 10 > th dose independent rect. 2 1
77 27.64 temperature 30.0 30 < th dose dependent rect. 2 1
82 27.64 atmosphere 995.0 10 > th dose dependent rect. 2 1
107 27.73 wind 1.0 30 > th dose independent rect. 2 1
111 27.78 wind 1.0 10 < th dose independent rect. 15 12
114 27.79 wind 1.0 10 < th dose independent rect. 17 10
116 27.79 precipitation 0.1 30 < th dose independent rect. 3 23
117 27.79 precipitation 0.1 30 < th dose dependent rect. 3 23
122 27.81 atmosphere 995.0 10 > th dose independent rect. 3 23
126 27.84 wind 9.0 30 < th dose independent rect. 3 23
130 27.90 wind 1.0 30 < th dose dependent rect. 24 3
139 27.94 temperature 25.0 90 > th dose dependent rect. 1 3
144 28.02 radiation 1.0 43200 < th dose dependent rect. 3 1
151 28.06 wind 9.0 1440 < th dose independent rect. 3 1
152 28.06 temperature 10.0 1440 > th dose independent rect. 3 1
155 28.06 temperature 30.0 1440 < th dose independent rect. 3 1
159 28.06 humidity 50.0 1440 > th dose independent rect. 3 1
168 28.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
169 28.06 radiation 1.0 1440 < th dose independent rect. 3 1
189 28.06 temperature 10.0 1440 > th dose independent rect. 4 23
192 28.06 radiation 1.0 1440 < th dose dependent rect. 3 1
210 28.14 temperature 20.0 270 < th dose independent rect. 9 1
222 28.33 wind 1.0 10 < th dose independent rect. 6 21
240 28.51 humidity 50.0 30 > th dose independent rect. 3 23
242 28.52 wind 1.0 30 < th dose dependent rect. 15 12
269 28.62 wind 1.0 30 < th dose dependent rect. 11 16
279 28.67 radiation 10.0 90 < th dose dependent rect. 10 1
304 28.79 wind 1.0 10 > th dose independent sin 16 NA
317 28.91 radiation 10.0 90 < th dose independent rect. 10 1
369 29.03 precipitation 0.1 4320 < th dose independent rect. 11 1
370 29.03 precipitation 0.1 4320 < th dose dependent rect. 11 1
377 29.05 wind 1.0 4320 < th dose dependent rect. 19 1
382 29.06 precipitation 0.1 4320 > th dose independent rect. 11 1
383 29.06 precipitation 0.1 4320 > th dose independent rect. 21 1
399 29.06 precipitation 0.1 4320 > th dose dependent rect. 11 1
406 29.07 precipitation 0.1 4320 > th dose independent rect. 16 1
407 29.07 precipitation 0.1 4320 > th dose dependent rect. 21 1
408 29.08 precipitation 0.1 4320 < th dose independent rect. 21 1
410 29.08 atmosphere 1015.0 30 < th dose independent rect. 3 23
411 29.08 precipitation 0.1 4320 > th dose dependent rect. 16 1
412 29.08 precipitation 0.1 4320 < th dose dependent rect. 21 1
436 29.13 precipitation 0.1 4320 < th dose independent rect. 16 1
442 29.13 precipitation 0.1 4320 < th dose dependent rect. 16 1
453 29.15 wind 1.0 10 < th dose independent sin 16 NA
462 29.16 precipitation 0.1 4320 > th dose independent rect. 8 1
466 29.16 precipitation 0.1 4320 > th dose dependent rect. 8 1
470 29.17 precipitation 0.1 4320 < th dose independent rect. 8 4
475 29.17 precipitation 0.1 4320 < th dose dependent rect. 8 4
477 29.18 wind 1.0 4320 < th dose independent rect. 19 1
482 29.18 wind 1.0 4320 < th dose dependent rect. 19 4
491 29.20 precipitation 0.1 4320 < th dose independent rect. 8 1
494 29.20 precipitation 0.1 4320 > th dose independent rect. 8 4
499 29.20 precipitation 0.1 4320 < th dose dependent rect. 8 1
502 29.20 precipitation 0.1 4320 > th dose dependent rect. 8 4
504 29.21 temperature 20.0 1440 > th dose independent rect. 9 1
524 29.23 wind 1.0 4320 > th dose independent rect. 19 1
525 29.23 humidity 90.0 90 < th dose independent rect. 2 1
561 29.27 atmosphere 995.0 14400 > th dose independent rect. 4 2
574 29.28 wind 1.0 30 > th dose independent rect. 3 23
593 29.30 atmosphere 995.0 14400 > th dose independent rect. 4 6
594 29.30 atmosphere 995.0 14400 > th dose independent rect. 4 8
596 29.32 atmosphere 995.0 14400 > th dose independent rect. 1 1
598 29.32 precipitation 0.1 4320 < th dose independent rect. 18 1
603 29.32 precipitation 0.1 4320 < th dose dependent rect. 18 1
604 29.32 wind 1.0 4320 < th dose dependent rect. 21 2
607 29.33 precipitation 0.1 4320 > th dose independent rect. 18 1
645 29.35 atmosphere 995.0 14400 < th dose dependent sin 7 NA
646 29.35 atmosphere 995.0 14400 < th dose dependent sin 9 NA
651 29.35 precipitation 0.1 4320 > th dose dependent rect. 8 14
655 29.36 precipitation 0.1 4320 > th dose independent rect. 8 11
656 29.36 precipitation 0.1 4320 < th dose independent rect. 8 11
657 29.36 precipitation 0.1 4320 > th dose independent rect. 8 14
659 29.36 precipitation 0.1 4320 < th dose independent rect. 8 15
667 29.36 precipitation 0.1 4320 > th dose dependent rect. 16 6
669 29.36 atmosphere 995.0 14400 < th dose dependent rect. 18 8
673 29.36 precipitation 0.1 4320 > th dose dependent rect. 8 11
674 29.36 precipitation 0.1 4320 < th dose dependent rect. 8 11
680 29.36 precipitation 0.1 4320 < th dose dependent rect. 8 15
691 29.37 precipitation 0.1 4320 > th dose independent rect. 16 6
725 29.38 atmosphere 995.0 14400 < th dose independent rect. 1 1
730 29.38 atmosphere 995.0 14400 < th dose independent rect. 21 1
792 29.38 precipitation 0.1 4320 < th dose independent rect. 16 6
898 29.38 atmosphere 995.0 14400 < th dose dependent rect. 1 1
903 29.38 atmosphere 995.0 14400 < th dose dependent rect. 21 1
964 29.38 precipitation 0.1 4320 < th dose dependent rect. 16 6