BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0492500 Os08g0492500|AK065316
         (167 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0492500  RINGv domain containing protein                     214   3e-56
Os09g0478600  RINGv domain containing protein                      95   3e-20

>Os08g0492500 RINGv domain containing protein
          Length = 167

 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 113/167 (67%)

Query: 1   MGISSMPAPKDSVVAYLLYNTAVSIAILADMVRAALVFLGLPVPPSAWEDGDDQLXXXXX 60
           MGISSMPAPKDSVVAYLLYNTAVSIAILADMVRAALVFLGLPVPPSAWEDGDDQL     
Sbjct: 1   MGISSMPAPKDSVVAYLLYNTAVSIAILADMVRAALVFLGLPVPPSAWEDGDDQLAAIAA 60

Query: 61  XXXXXXXXXGGPSLXXXXXXXXXXXXXXXXXXXXXXXXDCRVCLARFEPESVVNRLPCGH 120
                    GGPSL                        DCRVCLARFEPESVVNRLPCGH
Sbjct: 61  AAAAAAAAAGGPSLADRFRSRFRPARFGRRRGGGAGAADCRVCLARFEPESVVNRLPCGH 120

Query: 121 LFHRACLEKWLDYDHATCPLCRHRLLXXXXXXXXXXXXXXXXHFARI 167
           LFHRACLEKWLDYDHATCPLCRHRLL                HFARI
Sbjct: 121 LFHRACLEKWLDYDHATCPLCRHRLLPATTESPSPSPATATPHFARI 167



>Os09g0478600 RINGv domain containing protein
          Length = 110

 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 44/48 (91%)

Query: 99  DCRVCLARFEPESVVNRLPCGHLFHRACLEKWLDYDHATCPLCRHRLL 146
           DCRVCL RFE E+VVNRLPCGH+FHRACLE WLDYDHATCPLCR RLL
Sbjct: 47  DCRVCLVRFEAEAVVNRLPCGHIFHRACLETWLDYDHATCPLCRSRLL 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.142    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,519,196
Number of extensions: 134664
Number of successful extensions: 1117
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1213
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)