BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0483600 Os08g0483600|AK099543
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0483600  Conserved hypothetical protein                      358   2e-99
Os09g0468900  Conserved hypothetical protein                      170   6e-43
Os04g0450600  Conserved hypothetical protein                       82   3e-16

>Os08g0483600 Conserved hypothetical protein
          Length = 191

 Score =  358 bits (918), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/191 (93%), Positives = 178/191 (93%)

Query: 1   MATLTMQPIGPLPSTKQEGTRGEKPAEGGADLSDIDSGWVVLGKSDIVPADLAAQSLRSS 60
           MATLTMQPIGPLPSTKQEGTRGEKPAEGGADLSDIDSGWVVLGKSDIVPADLAAQSLRSS
Sbjct: 1   MATLTMQPIGPLPSTKQEGTRGEKPAEGGADLSDIDSGWVVLGKSDIVPADLAAQSLRSS 60

Query: 61  PKTIPTWARWVIGGVLHTVVPFYERARYVEDETARNVETAAEVVEQIAEVTEKLASNVAD 120
           PKTIPTWARWVIGGVLHTVVPFYERARYVEDETARNVETAAEVVEQIAEVTEKLASNVAD
Sbjct: 61  PKTIPTWARWVIGGVLHTVVPFYERARYVEDETARNVETAAEVVEQIAEVTEKLASNVAD 120

Query: 121 HLPENGCLQKVVEKIEYIXXXXXXXXXXXXXITEKIENFSDKIDAKVEPIFTEIEKEFED 180
           HLPENGCLQKVVEKIEYI             ITEKIENFSDKIDAKVEPIFTEIEKEFED
Sbjct: 121 HLPENGCLQKVVEKIEYIAEVVDEDAEKVEAITEKIENFSDKIDAKVEPIFTEIEKEFED 180

Query: 181 STSNDGVNANI 191
           STSNDGVNANI
Sbjct: 181 STSNDGVNANI 191



>Os09g0468900 Conserved hypothetical protein
          Length = 189

 Score =  170 bits (430), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 122/188 (64%), Gaps = 9/188 (4%)

Query: 1   MATLTMQPIGPLPSTKQEGTRGEK-PAEGGADLSDIDSGWVVLGKSDIVPADLAA----- 54
           MATLT+   G      QE   G K P +G  D S IDSGWVVLGKSDIVPADLAA     
Sbjct: 1   MATLTLPATGAAAQPGQEDPSGIKNPGDGAGDSSGIDSGWVVLGKSDIVPADLAAAAADA 60

Query: 55  --QSLRSSP-KTIPTWARWVIGGVLHTVVPFYERARYVEDETARNVETAAEVVEQIAEVT 111
             + L  SP   +P W + V+GGV++T VPFY RAR  EDE  +NVETA EVVE  AEVT
Sbjct: 61  GHRQLGFSPLPMLPIWVQMVLGGVVYTAVPFYNRARKAEDEVTKNVETALEVVEHAAEVT 120

Query: 112 EKLASNVADHLPENGCLQKVVEKIEYIXXXXXXXXXXXXXITEKIENFSDKIDAKVEPIF 171
           EKLA+NVA+ LPENG L K+ E++EYI             I +KIE+ S++IDA VEP+ 
Sbjct: 121 EKLAANVANALPENGTLHKLAEEVEYIAEIVDKDAQKVEIIIKKIEDVSNRIDAAVEPVI 180

Query: 172 TEIEKEFE 179
            E+EKEF+
Sbjct: 181 EELEKEFK 188



>Os04g0450600 Conserved hypothetical protein
          Length = 189

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)

Query: 63  TIPTWARWVIGGVLHTVVPFYERARYVEDETARNVETAAEVVEQIAEVTEKLASNVADHL 122
           ++P+WA+WV+G ++   +P Y + R +ED   +  E A EVV+ +AE TEK+A  +AD  
Sbjct: 74  SMPSWAKWVVGAII-VAIPIYRKIRALEDTVEKTAEVAIEVVDTVAEATEKVAGELADAF 132

Query: 123 PENGCLQKVVEKIEYIXXXXXXXXXXXXXITEKIENFSDKIDAKVEPIFTEIEKE 177
           P N  L++V  KI+ +             + +K++    ++DA V+PI  +I+KE
Sbjct: 133 PGNENLKEVASKIKTVADVIEDDAEKAEALIQKVDEIKKELDAIVDPIIDKIDKE 187



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,948,459
Number of extensions: 226941
Number of successful extensions: 497
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 3
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)