Os08g0483600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0483600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.57 | 0.337 | 12 | -1.3 | 0.0958 | 0.818 | 0.486 | -1.57 | -0.322 | 22.7 | 17.12 | 479 | -- | -- |
| 53.46 | 0.341 | 11.9 | -1.02 | 0.0911 | 0.815 | 0.358 | -- | -0.243 | 22.5 | 16.1 | 485 | -- | -- |
| 52.33 | 0.337 | 11.9 | -1.27 | 0.125 | 0.771 | -- | -1.4 | -0.314 | 21.5 | 17.4 | 429 | -- | -- |
| 53.66 | 0.341 | 11.9 | -1.02 | 0.129 | 0.763 | -- | -- | -0.231 | 19.5 | 15.39 | 541 | -- | -- |
| 53 | 0.339 | 11.9 | -1.29 | -- | 0.852 | -- | -1.34 | -0.319 | -- | 17.16 | 502 | -- | -- |
| 60.95 | 0.366 | 11.9 | -0.834 | 0.339 | -- | -0.0307 | -- | -0.114 | 19.1 | -- | -- | -- | -- |
| 60.95 | 0.366 | 11.9 | -0.833 | 0.339 | -- | -- | -- | -0.114 | 19.2 | -- | -- | -- | -- |
| 54.32 | 0.343 | 11.9 | -1.04 | -- | 0.847 | -- | -- | -0.25 | -- | 16.1 | 540 | -- | -- |
| 77.7 | 0.411 | 11.9 | -- | 0.245 | 0.278 | -- | -- | -0.0622 | 19.3 | 20.4 | 474 | -- | -- |
| 67.02 | 0.383 | 11.9 | -0.84 | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
| 79.25 | 0.416 | 11.9 | -- | 0.348 | -- | -- | -- | -0.0208 | 19 | -- | -- | -- | -- |
| 80.06 | 0.417 | 11.9 | -- | -- | 0.449 | -- | -- | -0.0911 | -- | 20.9 | 495 | -- | -- |
| 85.61 | 0.432 | 11.9 | -- | -- | -- | -- | -- | -0.0264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 10 | 47.53 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 16 |
| 15 | 47.67 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 17 | 47.71 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 64 | 48.91 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 69 | 48.92 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 22 |
| 74 | 49.09 | radiation | 1.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 79 | 49.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 82 | 49.15 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 83 | 49.16 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 85 | 49.16 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 5 |
| 91 | 49.22 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 105 | 49.31 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 112 | 49.36 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 118 | 49.39 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 119 | 49.40 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 129 | 49.45 | radiation | 1.0 | 90 | < th | dose independent | sin | 12 | NA |
| 133 | 49.46 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 6 |
| 154 | 49.56 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 158 | 49.59 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 171 | 49.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 14 |
| 172 | 49.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 177 | 49.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 187 | 49.71 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 21 |
| 191 | 49.75 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 22 |
| 209 | 49.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 212 | 49.82 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 213 | 49.83 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 216 | 49.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 227 | 49.89 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 230 | 49.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 234 | 49.89 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 240 | 49.89 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 241 | 49.89 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 254 | 49.89 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 16 |
| 260 | 49.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 271 | 49.92 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 279 | 49.93 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 4 |
| 280 | 49.93 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 281 | 49.93 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 283 | 49.93 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 306 | 49.99 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 14 |
| 317 | 50.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 323 | 50.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 324 | 50.02 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 369 | 50.11 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 370 | 50.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 373 | 50.13 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 388 | 50.17 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 392 | 50.18 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 395 | 50.19 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 19 |
| 402 | 50.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 409 | 50.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 413 | 50.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 418 | 50.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 10 |
| 419 | 50.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 434 | 50.28 | temperature | 30.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 437 | 50.29 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 470 | 50.37 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 15 | 7 |
| 477 | 50.38 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 487 | 50.40 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 511 | 50.47 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 515 | 50.48 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 19 |
| 519 | 50.48 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 534 | 50.51 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 545 | 50.54 | temperature | 10.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 561 | 50.56 | radiation | 1.0 | 90 | > th | dose independent | sin | 12 | NA |
| 564 | 50.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 565 | 50.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 566 | 50.57 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 569 | 50.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 570 | 50.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 579 | 50.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 5 |
| 580 | 50.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 611 | 50.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 613 | 50.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 622 | 50.67 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 634 | 50.69 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 668 | 50.74 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 685 | 50.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 719 | 50.80 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 726 | 50.82 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 729 | 50.82 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 730 | 50.82 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 732 | 50.82 | temperature | 25.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 733 | 50.82 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 762 | 50.87 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 765 | 50.87 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 781 | 50.89 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 5 | 17 |
| 794 | 50.92 | wind | 7.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 797 | 50.92 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 805 | 50.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 817 | 50.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 819 | 50.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 820 | 50.94 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 822 | 50.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 823 | 50.94 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 828 | 50.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 840 | 50.95 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 848 | 50.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 851 | 50.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 863 | 50.98 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 866 | 50.98 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 874 | 50.99 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 879 | 51.00 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 8 |
| 927 | 51.05 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 943 | 51.07 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 5 |
| 948 | 51.07 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 958 | 51.08 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 961 | 51.08 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 962 | 51.08 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 967 | 51.08 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 19 |