BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0483600 Os08g0483600|AK099543
         (191 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14095.1  | chr2:5932506-5933752 REVERSE LENGTH=235             57   4e-09

>AT2G14095.1 | chr2:5932506-5933752 REVERSE LENGTH=235
          Length = 234

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 11/119 (9%)

Query: 63  TIPTWARWVIGGVLHTVVPFY-----ERARYVEDET---ARNVETAAEVVEQIAEVTEKL 114
             P+W RWVIG  +  V+ F+     ++ + +E E       VE  AE+VE++A  T+++
Sbjct: 89  NFPSWGRWVIGSAISLVLSFWNNERLQKLKRIEGEAELVVEGVEAVAEMVEKVATATDEM 148

Query: 115 ASNVADHLPENGCLQKVVEKIEYIXXXXXXXXXXXXXITEKIENFSDKID---AKVEPI 170
           A  +A+ LPE   L++V   +E+I                K+E  +  ID   A ++P+
Sbjct: 149 AEEMAEKLPEKNKLKQVALVLEHISEVAAHEAHLTQDFLHKVEKVTQDIDDLEAMIKPL 207



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,824,512
Number of extensions: 142031
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 98
Effective length of database: 8,556,881
Effective search space: 838574338
Effective search space used: 838574338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 109 (46.6 bits)