BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0480400 Os08g0480400|J065214F15
         (113 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0480400  Protein of unknown function DUF1637 family pro...   187   2e-48
Os09g0471000  Protein of unknown function DUF1637 family pro...    94   2e-20

>Os08g0480400 Protein of unknown function DUF1637 family protein
          Length = 113

 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/113 (82%), Positives = 93/113 (82%)

Query: 1   MAVAFPPHIMVLSKMQRLYDACDMIFSSPASAAPTIGEIRWLQHLLDGMEAADVGIDDGX 60
           MAVAFPPHIMVLSKMQRLYDACDMIFSSPASAAPTIGEIRWLQHLLDGMEAADVGIDDG 
Sbjct: 1   MAVAFPPHIMVLSKMQRLYDACDMIFSSPASAAPTIGEIRWLQHLLDGMEAADVGIDDGE 60

Query: 61  XXXXXXXXXXXXXXXXXXXKDGRLLPARAFTRITYMHIHQCADFSVRTYASIN 113
                              KDGRLLPARAFTRITYMHIHQCADFSVRTYASIN
Sbjct: 61  SPPSSSSSSCSSSDDEVSSKDGRLLPARAFTRITYMHIHQCADFSVRTYASIN 113



>Os09g0471000 Protein of unknown function DUF1637 family protein
          Length = 226

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 63/98 (64%), Gaps = 3/98 (3%)

Query: 13  SKMQRLYDACDMIFSSPASAA-PTIGEIRWLQHLLDGMEAADVGIDDGXXXXXXXXXXXX 71
           SK+QRLYDACD +FSS + A  PT+ +IRWLQ LLDGMEAADVGI+ G            
Sbjct: 6   SKVQRLYDACDAVFSSGSKAGLPTLKQIRWLQDLLDGMEAADVGIEGGGSGGERSSSSED 65

Query: 72  XXXXXXXXKDGRLLPARAFTRITYMHIHQCADFSVRTY 109
                   +  R L ARAFTRITY+HIH+C DFS+  +
Sbjct: 66  DDERSPPGR--RFLSARAFTRITYVHIHECDDFSIGVF 101



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,244,924
Number of extensions: 90208
Number of successful extensions: 245
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)