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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0480400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1637 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0384) R2 : 0.519
β1 : -0.0442 (0.158) R2dD : 0.00011 R2D : 0.0037
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.89 (0.205) R2dE : 0.276 R2E : 0.418
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.48 (0.582) R2dD*E : 0.0983 R2D*E : 0.242
γ1 : 0.00815 (0.0841) R2dN8 : 1.4e-05 R2N8 : -0.00309
σ : 0.691
deviance : 220.37
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.4
memory length : 619
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.54
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
218.17 0.694 3.33 -0.034 0.211 2.98 0.2 -4.24 0.0311 24 22.74 626 2.27 --
236.51 0.716 3.42 -0.563 0.203 3.63 1.36 -- -0.132 23.3 22.3 570 1.4 --
218.16 0.688 3.33 -0.0211 0.215 3 -- -4.38 0.0283 23.8 22.6 639 2.32 --
243.37 0.727 3.41 -0.56 0.282 4.11 -- -- -0.113 24 22.31 574 0.407 --
220.37 0.691 3.33 -0.0442 -- 2.89 -- -4.48 0.00815 -- 22.4 619 2.54 --
372.23 0.904 3.49 -1.2 0.349 -- -2.24 -- -0.549 10.3 -- -- -- --
391.99 0.927 3.49 -1.29 0.378 -- -- -- -0.557 9.39 -- -- -- --
246.7 0.732 3.41 -0.604 -- 3.96 -- -- -0.138 -- 22.07 528 0.583 --
251.24 0.738 3.38 -- 0.303 4.33 -- -- -0.0191 23.7 22.2 594 0.635 --
400.37 0.935 3.5 -1.3 -- -- -- -- -0.555 -- -- -- -- --
436.15 0.977 3.46 -- 0.38 -- -- -- -0.413 9.65 -- -- -- --
255.32 0.744 3.38 -- -- 4 -- -- -0.044 -- 21.91 574 1.36 --
444.71 0.984 3.47 -- -- -- -- -- -0.412 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.02 temperature 20 1440 < th dose dependent rect. 4 1
5 216.67 temperature 25 720 < th dose dependent rect. 19 17
27 222.64 temperature 25 720 < th dose dependent sin 8 NA
36 223.64 temperature 15 720 > th dose dependent rect. 20 15
45 224.70 temperature 15 720 > th dose dependent sin 9 NA
57 225.48 temperature 20 720 < th dose dependent rect. 23 6
61 225.71 temperature 25 1440 < th dose dependent rect. 3 8
87 227.09 temperature 20 720 > th dose independent rect. 21 17
96 227.67 temperature 20 720 < th dose independent rect. 21 15
118 228.35 temperature 20 1440 < th dose independent rect. 3 6
127 228.61 temperature 10 1440 > th dose dependent rect. 4 2
139 228.81 temperature 20 1440 > th dose independent rect. 3 7
148 229.09 temperature 20 1440 < th dose independent rect. 2 8
153 229.19 temperature 20 720 > th dose independent rect. 21 14
158 229.26 temperature 20 1440 > th dose independent rect. 5 2
167 229.37 temperature 20 720 < th dose independent sin 8 NA
168 229.38 temperature 20 1440 < th dose independent rect. 22 12
180 229.54 temperature 20 1440 < th dose independent rect. 5 2
185 229.55 temperature 25 1440 < th dose dependent rect. 8 1
186 229.58 temperature 20 720 > th dose independent sin 8 NA
459 233.91 temperature 20 1440 < th dose independent rect. 22 2
471 234.06 temperature 15 720 > th dose dependent rect. 22 10
663 236.19 temperature 20 1440 > th dose independent rect. 22 2
905 238.71 temperature 30 90 < th dose dependent rect. 19 17