BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0472600 Os08g0472600|AK099681
         (513 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0472600  Similar to Alpha1,3-fucosyltransferase (Fragment)   973   0.0  
Os12g0170600  Similar to Alpha-1,4-fucosyltransferase              77   3e-14

>Os08g0472600 Similar to Alpha1,3-fucosyltransferase (Fragment)
          Length = 513

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/513 (92%), Positives = 475/513 (92%)

Query: 1   MKGSHXXXXXXXXXXXGRRRRCGWLLPLLVGAAFLAEIAFLGRLDMAKNAAAVESWTTSF 60
           MKGSH           GRRRRCGWLLPLLVGAAFLAEIAFLGRLDMAKNAAAVESWTTSF
Sbjct: 1   MKGSHSQSQAQAQSQAGRRRRCGWLLPLLVGAAFLAEIAFLGRLDMAKNAAAVESWTTSF 60

Query: 61  YARSSAPARDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIRLCEERLEREDGVPHDRDFD 120
           YARSSAPARDGK                           IRLCEERLEREDGVPHDRDFD
Sbjct: 61  YARSSAPARDGKAAVVVPGADADDAPPGGGEVVEEDDGDIRLCEERLEREDGVPHDRDFD 120

Query: 121 KDPVLVGGAAKDWNKCSVGCEFGFSATKTPDATFGIAPDPTVESILRSMESSQYYSENNI 180
           KDPVLVGGAAKDWNKCSVGCEFGFSATKTPDATFGIAPDPTVESILRSMESSQYYSENNI
Sbjct: 121 KDPVLVGGAAKDWNKCSVGCEFGFSATKTPDATFGIAPDPTVESILRSMESSQYYSENNI 180

Query: 181 AVARGRGYKIVMTTSLSSDVPVGYFSWAEYDIMAPVPPKTEEALAAAFISNCGARNFRLQ 240
           AVARGRGYKIVMTTSLSSDVPVGYFSWAEYDIMAPVPPKTEEALAAAFISNCGARNFRLQ
Sbjct: 181 AVARGRGYKIVMTTSLSSDVPVGYFSWAEYDIMAPVPPKTEEALAAAFISNCGARNFRLQ 240

Query: 241 ALEMLESLDVKIDSYGSCHRNHDGKVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVT 300
           ALEMLESLDVKIDSYGSCHRNHDGKVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVT
Sbjct: 241 ALEMLESLDVKIDSYGSCHRNHDGKVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVT 300

Query: 301 GAIPVVIGAPNIQEFSPGEGAILHIKELDDVPSIAKTMKHIASNQEAFNQSLRWKYDGPS 360
           GAIPVVIGAPNIQEFSPGEGAILHIKELDDVPSIAKTMKHIASNQEAFNQSLRWKYDGPS
Sbjct: 301 GAIPVVIGAPNIQEFSPGEGAILHIKELDDVPSIAKTMKHIASNQEAFNQSLRWKYDGPS 360

Query: 361 DSFKALIDMAAVHSSCRLCIHVATKIHEKEERTPKFMNRPCSCSSKRGKVYHLFVRERGR 420
           DSFKALIDMAAVHSSCRLCIHVATKIHEKEERTPKFMNRPCSCSSKRGKVYHLFVRERGR
Sbjct: 361 DSFKALIDMAAVHSSCRLCIHVATKIHEKEERTPKFMNRPCSCSSKRGKVYHLFVRERGR 420

Query: 421 FKTESIFLRSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLT 480
           FKTESIFLRSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLT
Sbjct: 421 FKTESIFLRSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLT 480

Query: 481 QRQALYQFRFRDDADLDKYIKDHPCAKLEVIFV 513
           QRQALYQFRFRDDADLDKYIKDHPCAKLEVIFV
Sbjct: 481 QRQALYQFRFRDDADLDKYIKDHPCAKLEVIFV 513



>Os12g0170600 Similar to Alpha-1,4-fucosyltransferase
          Length = 444

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 5/144 (3%)

Query: 240 QALEMLESLDVKIDSYGSCHRNHDGKVDKVETL----KRYKFSLAFENSNEEDYVTEKFF 295
           + L  ++  D+ +  Y  C  N +GK    + L      YKF LA EN+  E YVTEK F
Sbjct: 288 KCLNNVDGPDMALSMYPVCSTNDNGKPHWWDHLHCAMSHYKFVLAIENTKTESYVTEKLF 347

Query: 296 QSLVTGAIPVVIGAPNIQEFSPGEGAILHIKELDDVPSIAKTMKHIASNQEAFNQSLRWK 355
            +L  G++P+  GAPN+ +F P   +I+   +   +  +A  +K +A++  A+ +   W+
Sbjct: 348 YALEAGSVPIYFGAPNVWDFIP-PNSIIDASKFSSLRELASYVKAVANDPVAYAEYHAWR 406

Query: 356 YDGPSDSFKALIDMAAVHSSCRLC 379
             G   +F    +M+     CRLC
Sbjct: 407 RCGTLGNFGRSREMSLDTLPCRLC 430



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,945,043
Number of extensions: 673834
Number of successful extensions: 1481
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1479
Number of HSP's successfully gapped: 2
Length of query: 513
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 408
Effective length of database: 11,553,331
Effective search space: 4713759048
Effective search space used: 4713759048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)