BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0469600 Os08g0469600|AK062647
         (122 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0469600  Conserved hypothetical protein                      181   1e-46
Os02g0577900  Conserved hypothetical protein                       87   3e-18

>Os08g0469600 Conserved hypothetical protein
          Length = 122

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 18  GEPSMVKERLRVLGHLVPGCRKLPAPMLLGPTMWPRWRCSQGHVLIDLLAATAGDACDRG 77
           GEPSMVKERLRVLGHLVPGCRKLPAPMLLGPTMWPRWRCSQGHVLIDLLAATAGDACDRG
Sbjct: 18  GEPSMVKERLRVLGHLVPGCRKLPAPMLLGPTMWPRWRCSQGHVLIDLLAATAGDACDRG 77

Query: 78  RRVNGQRAAHDVGDRAVPPQRRRWGGATM 106
           RRVNGQRAAHDVGDRAVPPQRRRWGGATM
Sbjct: 78  RRVNGQRAAHDVGDRAVPPQRRRWGGATM 106



>Os02g0577900 Conserved hypothetical protein
          Length = 120

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 64/89 (71%), Gaps = 2/89 (2%)

Query: 18  GEPSMVKERLRVLGHLVPGCRKLPAPMLLGPTMWPRWRCSQGHVLIDLLAATAGDACDRG 77
           GEP MVKE LR+LGHLV GC   P    LG          QGHVL+DLLAA AGDACDRG
Sbjct: 18  GEPPMVKEWLRLLGHLVTGCS--PRQRCLGKLRGRAVDAGQGHVLVDLLAAAAGDACDRG 75

Query: 78  RRVNGQRAAHDVGDRAVPPQRRRWGGATM 106
           RRV+ QRAAH VGDR V PQRR+WGGATM
Sbjct: 76  RRVDEQRAAHYVGDRGVAPQRRQWGGATM 104



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,871,053
Number of extensions: 148117
Number of successful extensions: 569
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)