Os08g0469600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0469600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.08 | 0.506 | 10.7 | 0.402 | 2.02 | 1.14 | -0.465 | -0.58 | -0.171 | 23.4 | 21.93 | 9 | -- | -- |
| 115.93 | 0.505 | 10.7 | 0.417 | 2.1 | 1.07 | -1.08 | -- | -0.173 | 23.4 | 21.91 | 6 | -- | -- |
| 116.18 | 0.506 | 10.7 | 0.431 | 2.15 | 1.03 | -- | -0.954 | -0.171 | 23.4 | 21.93 | 9 | -- | -- |
| 120.71 | 0.512 | 10.7 | 0.44 | 2.07 | 1.09 | -- | -- | -0.172 | 23.4 | 21.62 | 6 | -- | -- |
| 155.88 | 0.581 | 10.7 | 0.463 | -- | 2.52 | -- | -0.441 | -0.183 | -- | 11.5 | 7 | -- | -- |
| 139.57 | 0.554 | 10.7 | 0.37 | 3.15 | -- | -0.847 | -- | -0.182 | 23.6 | -- | -- | -- | -- |
| 142.67 | 0.559 | 10.7 | 0.404 | 3.15 | -- | -- | -- | -0.178 | 23.6 | -- | -- | -- | -- |
| 158.94 | 0.587 | 10.7 | 0.402 | -- | 2.53 | -- | -- | -0.13 | -- | 10.82 | 7 | -- | -- |
| 125.85 | 0.522 | 10.7 | -- | 2.09 | 1.07 | -- | -- | -0.222 | 23.4 | 21.29 | 6 | -- | -- |
| 765.7 | 1.29 | 10.7 | 0.491 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 146.97 | 0.567 | 10.8 | -- | 3.15 | -- | -- | -- | -0.223 | 23.6 | -- | -- | -- | -- |
| 162.77 | 0.594 | 10.7 | -- | -- | 2.53 | -- | -- | -0.17 | -- | 10.63 | 7 | -- | -- |
| 772.06 | 1.3 | 10.7 | -- | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.40 | humidity | 60 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 3 | 108.85 | humidity | 50 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 27 | 111.02 | humidity | 70 | 10 | > th | dose independent | rect. | 2 | 18 |
| 32 | 111.27 | humidity | 50 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 41 | 111.79 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 9 |
| 53 | 112.30 | temperature | 30 | 10 | < th | dose independent | rect. | 2 | 18 |
| 57 | 112.33 | temperature | 30 | 90 | < th | dose independent | rect. | 2 | 17 |
| 69 | 112.66 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 18 |
| 77 | 112.94 | humidity | 80 | 270 | > th | dose independent | rect. | 24 | 17 |
| 118 | 113.87 | radiation | 10 | 10 | < th | dose dependent | sin | 1 | NA |
| 121 | 113.87 | radiation | 20 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 150 | 114.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 162 | 114.45 | humidity | 70 | 10 | > th | dose independent | rect. | 11 | 9 |
| 172 | 114.61 | temperature | 15 | 270 | > th | dose independent | rect. | 5 | 8 |
| 175 | 114.63 | radiation | 20 | 270 | < th | dose dependent | rect. | 24 | 17 |
| 195 | 114.82 | humidity | 70 | 10 | > th | dose dependent | sin | 1 | NA |
| 207 | 114.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 219 | 115.11 | radiation | 1 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 252 | 115.42 | radiation | 1 | 270 | < th | dose independent | rect. | 23 | 20 |
| 301 | 115.77 | radiation | 1 | 30 | > th | dose independent | sin | 1 | NA |
| 327 | 115.99 | radiation | 1 | 30 | < th | dose independent | sin | 0 | NA |
| 377 | 116.33 | humidity | 90 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 382 | 116.38 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 19 |
| 388 | 116.41 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 394 | 116.45 | wind | 1 | 270 | > th | dose independent | rect. | 24 | 19 |
| 396 | 116.45 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 401 | 116.47 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 17 |
| 407 | 116.53 | radiation | 1 | 270 | < th | dose independent | rect. | 24 | 18 |
| 414 | 116.56 | humidity | 90 | 10 | < th | dose dependent | sin | 2 | NA |
| 428 | 116.62 | radiation | 1 | 90 | < th | dose independent | rect. | 2 | 17 |
| 436 | 116.65 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 450 | 116.74 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 604 | 117.52 | temperature | 30 | 90 | < th | dose independent | rect. | 13 | 7 |
| 622 | 117.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 10 |
| 629 | 117.58 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 9 |
| 631 | 117.60 | radiation | 20 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 651 | 117.68 | radiation | 20 | 10 | < th | dose independent | rect. | 2 | 18 |
| 678 | 117.77 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 684 | 117.80 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 9 |
| 705 | 117.88 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 8 |
| 764 | 118.09 | humidity | 70 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 787 | 118.18 | humidity | 90 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 807 | 118.26 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 13 |
| 810 | 118.27 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 827 | 118.32 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 16 |
| 828 | 118.33 | radiation | 40 | 90 | < th | dose independent | rect. | 2 | 18 |
| 830 | 118.33 | humidity | 60 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 863 | 118.41 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 9 |
| 903 | 118.50 | humidity | 90 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 912 | 118.52 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 921 | 118.54 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 13 | 16 |
| 932 | 118.56 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 6 |
| 936 | 118.57 | radiation | 40 | 270 | < th | dose independent | rect. | 24 | 17 |
| 972 | 118.66 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 9 |