BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0469500 Os08g0469500|AK109599
         (394 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0469500  Conserved hypothetical protein                      751   0.0  
Os09g0454300  Cyclin-like F-box domain containing protein         528   e-150

>Os08g0469500 Conserved hypothetical protein
          Length = 394

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/394 (94%), Positives = 371/394 (94%)

Query: 1   MERXXXXXXXXMDALPDGVVQHILSQLSSARDVAACAGVSRGMRGCVPFLPALYFPRXXX 60
           MER        MDALPDGVVQHILSQLSSARDVAACAGVSRGMRGCVPFLPALYFPR   
Sbjct: 1   MERGGGGGGGGMDALPDGVVQHILSQLSSARDVAACAGVSRGMRGCVPFLPALYFPRGAF 60

Query: 61  XXXXXXXXXXXXIGRMVEAAARLEELVIYCPFSAARLPRWLAARSASLRVLELRMDSAVS 120
                       IGRMVEAAARLEELVIYCPFSAARLPRWLAARSASLRVLELRMDSAVS
Sbjct: 61  DAAGGAAAADDAIGRMVEAAARLEELVIYCPFSAARLPRWLAARSASLRVLELRMDSAVS 120

Query: 121 SGAGSGHLDCIGAVANLEELRLWGLTMTRAPAWGQLERLRVLEIVGAAVRDVAVNGAVGA 180
           SGAGSGHLDCIGAVANLEELRLWGLTMTRAPAWGQLERLRVLEIVGAAVRDVAVNGAVGA
Sbjct: 121 SGAGSGHLDCIGAVANLEELRLWGLTMTRAPAWGQLERLRVLEIVGAAVRDVAVNGAVGA 180

Query: 181 CPNLTDLAAPLVESLEIQGFCWISLQGGIRLKHLTIAKNTGTGSVYNIEIGKLPELEKLS 240
           CPNLTDLAAPLVESLEIQGFCWISLQGGIRLKHLTIAKNTGTGSVYNIEIGKLPELEKLS
Sbjct: 181 CPNLTDLAAPLVESLEIQGFCWISLQGGIRLKHLTIAKNTGTGSVYNIEIGKLPELEKLS 240

Query: 241 LRGVQWSWGAISSVLQCAREVKYLVMKIEFCGDHDTLEPFPEVDLVDFFNSHPKLIKFEI 300
           LRGVQWSWGAISSVLQCAREVKYLVMKIEFCGDHDTLEPFPEVDLVDFFNSHPKLIKFEI
Sbjct: 241 LRGVQWSWGAISSVLQCAREVKYLVMKIEFCGDHDTLEPFPEVDLVDFFNSHPKLIKFEI 300

Query: 301 HGAMFAAMCQKNSLKNLDSRFSIPCLEEVLITVRSPLNAELKLNTLESLVKYSPRMRRMV 360
           HGAMFAAMCQKNSLKNLDSRFSIPCLEEVLITVRSPLNAELKLNTLESLVKYSPRMRRMV
Sbjct: 301 HGAMFAAMCQKNSLKNLDSRFSIPCLEEVLITVRSPLNAELKLNTLESLVKYSPRMRRMV 360

Query: 361 VRISQMKNCHGSADGFFEEICKFMYMNNGRVRIE 394
           VRISQMKNCHGSADGFFEEICKFMYMNNGRVRIE
Sbjct: 361 VRISQMKNCHGSADGFFEEICKFMYMNNGRVRIE 394



>Os09g0454300 Cyclin-like F-box domain containing protein
          Length = 428

 Score =  528 bits (1359), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/420 (65%), Positives = 312/420 (74%), Gaps = 39/420 (9%)

Query: 12  MDALPDGVVQHILSQLSSARDVAACAGVSRGMRGCVPFLPALYFPRXX-XXXXXXXXXXX 70
           M+A+PDGVVQH+LS LS+ RDVAACA V R  R CVP+LPAL+FPR              
Sbjct: 11  MNAVPDGVVQHVLSMLSNVRDVAACACVCRRWRECVPYLPALFFPRNAFDTAAAAGGAAD 70

Query: 71  XXIGRMVEAAARLEELVIYCPFSAARLPRWLAARSASLRVLELRMDSAVSSGAG-SGHLD 129
             IGRMV +  RL ELVIYCPFS ARLP WLA RS SLRVLELRMD+A +  A   G+LD
Sbjct: 71  DAIGRMVRSVERLRELVIYCPFSMARLPEWLALRSTSLRVLELRMDAAAADKAEDGGYLD 130

Query: 130 CIGAVANLEELRLWGLTMTRAPAWGQLERLRVLEIVGAAVRDVAVNGAVGACPNLTD--- 186
           CIG    LEELRLWG+++T APAWG+L++LRVLEIVGA + D AV  A+ ACPNLTD   
Sbjct: 131 CIGLARGLEELRLWGVSLTAAPAWGRLDKLRVLEIVGAPLEDSAVKDAISACPNLTDLSL 190

Query: 187 --------------------------------LAAPLVESLEIQGFCWISLQGGIRLKHL 214
                                           LAAP VESLE+QGF WI+L+GG  L+ L
Sbjct: 191 LGCDCSGAVSIELALLERCRLDFLGAGNCSLSLAAPRVESLEVQGFTWITLRGGHSLRRL 250

Query: 215 TIAKNTGTGSVYNIEIGKLPELEKLSLRGVQWSWGAISSVLQCAREVKYLVMKIEFCGDH 274
           +IAK+  TG VY ++ GKLP+LE LSLRGVQWSW A+SSVLQCAR+VK+LVMKIEF GD 
Sbjct: 251 SIAKS--TGRVYKVDTGKLPDLEHLSLRGVQWSWAAVSSVLQCARDVKHLVMKIEFSGDF 308

Query: 275 DTLEPFPEVDLVDFFNSHPKLIKFEIHGAMFAAMCQKNSLKNLDSRFSIPCLEEVLITVR 334
           D L+PFPEVDLVDFFNSHP L KF+IHGAMFAA+CQKNSLKNLD+RF IPCLEEVLITVR
Sbjct: 309 DALQPFPEVDLVDFFNSHPNLRKFDIHGAMFAALCQKNSLKNLDARFCIPCLEEVLITVR 368

Query: 335 SPLNAELKLNTLESLVKYSPRMRRMVVRISQMKNCHGSADGFFEEICKFMYMNNGRVRIE 394
           SPLNAE KLNTLESLVKYS R+R MV+RISQMKNCH +AD FFEEICKF YMNN +VR+E
Sbjct: 369 SPLNAEQKLNTLESLVKYSVRLRSMVIRISQMKNCHDAADDFFEEICKFKYMNNKKVRVE 428



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,923,228
Number of extensions: 462148
Number of successful extensions: 1715
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1711
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 157 (65.1 bits)