BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0462900 Os08g0462900|J100084I23
(308 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0462900 Protein of unknown function DUF716 family protein 471 e-133
Os09g0444800 Protein of unknown function DUF716 family protein 126 2e-29
Os09g0444900 Protein of unknown function DUF716 family protein 123 2e-28
Os08g0462800 Protein of unknown function DUF716 family protein 121 7e-28
Os02g0167800 88 1e-17
>Os08g0462900 Protein of unknown function DUF716 family protein
Length = 308
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/308 (79%), Positives = 244/308 (79%)
Query: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGXXXXXXXXX 60
MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPG
Sbjct: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGLKHLELYLL 60
Query: 61 XXXXXXAIVDQLVDFPLLSFTIQPDALEHATMYLHLAVYXXXXXXXXXXXXXXXXXXXXX 120
AIVDQLVDFPLLSFTIQPDALEHATMYLHLAVY
Sbjct: 61 LSFSVLAIVDQLVDFPLLSFTIQPDALEHATMYLHLAVYASVALAADGVAASSSHHGGAQ 120
Query: 121 XXLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVSTSATVVLPXX 180
LGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVSTSATVVLP
Sbjct: 121 AQLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVSTSATVVLPRS 180
Query: 181 XXXXXXXXXXXLFQGLWFIVMGFALWVPALVPRGCHGAEAGGGAMRSAVACPTDEAARRA 240
LFQGLWFIVMGFALWVPALVPRGCHGAEAGGGAMRSAVACPTDEAARRA
Sbjct: 181 FAVAVVRSASVLFQGLWFIVMGFALWVPALVPRGCHGAEAGGGAMRSAVACPTDEAARRA 240
Query: 241 VVMANLQFSWVLAGVWAVTAYLCLRVGGSRSMEYRQIQAPSXXXXXXXXXXXXXTQSQKR 300
VVMANLQFSWVLAGVWAVTAYLCLRVGGSRSMEYRQIQAPS TQSQKR
Sbjct: 241 VVMANLQFSWVLAGVWAVTAYLCLRVGGSRSMEYRQIQAPSGGDVGALAGDGDATQSQKR 300
Query: 301 VFPVSDNV 308
VFPVSDNV
Sbjct: 301 VFPVSDNV 308
>Os09g0444800 Protein of unknown function DUF716 family protein
Length = 315
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 122/269 (45%), Gaps = 28/269 (10%)
Query: 5 LGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGXXXXXXXXXXXXX 64
+GH +PG F +G+WH N V+ + + + + A AWFP VPG
Sbjct: 13 IGHILPGAGFVAVGVWHLFNHVKLFSQRPDT-YVAPAWFP----VPGARYLELALIIAGS 67
Query: 65 XXAIVDQLV--DFPLLSF----TIQPDAL---EHATMYLHLAVYXXXXXXXXXXXXXXXX 115
++ LL F +I D L EHA + L LAVY
Sbjct: 68 GVEFAMEMFVGHSTLLPFAADGSIPSDRLHNHEHAIICLSLAVYAAAALHLDRARAPAR- 126
Query: 116 XXXXXXXLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVSTSATV 175
G + L A+VF QEL + FHS DHAG+EG +HWLLQ+VV A L ++ V
Sbjct: 127 --------GTLGLLLVAAVFAQELLVFHFHSTDHAGVEGQFHWLLQVVVAACLATSLLGV 178
Query: 176 VLPXXXXXXXXXXXXXLFQGLWFIVMGFALWVPALVPRGCHGAEAGGGAMRSAVACPTDE 235
P F GLW V+G +WVP+LVPRGC G R V C + E
Sbjct: 179 GYPRSFAVGLARSACVAFHGLWLAVIGAMVWVPSLVPRGCELVREDG---RDTVRCRSKE 235
Query: 236 AARRAVVMANLQFSWVLA--GVWAVTAYL 262
+ RA +ANLQF W L+ V+ V YL
Sbjct: 236 SLHRAKALANLQFGWYLSFMTVFVVALYL 264
>Os09g0444900 Protein of unknown function DUF716 family protein
Length = 318
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 119/264 (45%), Gaps = 28/264 (10%)
Query: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGXXXXXXXXX 60
MGT +GH PG F ++G+W N +R + L+ +S + A WFP V G
Sbjct: 1 MGTMVGHVAPGAGFILIGMWQLFNHIRLFALRPSS-YAAPVWFP----VRGVRHLELILV 55
Query: 61 XXXXXXAIVDQLVDFPLLSFTIQPDA---------LEHATMYLHLAVYXXXXXXXXXXXX 111
+I+ +LV P D EHA++ L L VY
Sbjct: 56 IVGAAISILMELVIGPARHQPFDDDGTIPSNHLHNFEHASISLALLVYAAVTIHMDRARA 115
Query: 112 XXXXXXXXXXXLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVST 171
V +AA+ F Q+L + HSADH G+EG +HWLLQ V+ +L +T
Sbjct: 116 PMR---------DAVSQLVAAAAFAQQLLIFHLHSADHMGVEGQFHWLLQTVIAVTLATT 166
Query: 172 SATVVLPXXXXXXXXXXXXXLFQGLWFIVMGFALWVPALVPRGCH-GAEAGGGAMRSAVA 230
+ P +FQG+WF+VMG LW PAL+P+GC E G +R
Sbjct: 167 VLGIPCPRSFAVSLVRSASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVVR---- 222
Query: 231 CPTDEAARRAVVMANLQFSWVLAG 254
C TDEA RA + NLQFSW L
Sbjct: 223 CRTDEALHRAKSLVNLQFSWYLTA 246
>Os08g0462800 Protein of unknown function DUF716 family protein
Length = 315
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 120/269 (44%), Gaps = 11/269 (4%)
Query: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGXXXXXXXXX 60
MGT +GH PG F ++GLWH N +R + L+ + + A WFP V
Sbjct: 1 MGTLVGHVAPGAGFLLVGLWHLYNHIRLFLLR-PTAYVAPVWFP----VRRARYLELALV 55
Query: 61 XXXXXXAIVDQLVDFPLLSFTIQPDAL---EHATMYLHLAVYXXXXXXXXXXXXXXXXXX 117
+I+ +LV P D +H + H ++
Sbjct: 56 IAGAVASILMELVVGPARHQPFDADGTVPSDHLHNFEHASISLALLVYAAAAAALDVARV 115
Query: 118 XXXXXLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVSTSATVVL 177
+ ++VAA+A F Q+L L HSADHAG+EG YH LLQ VV +L +T V
Sbjct: 116 PHGRAVSQLVAAVA---FAQQLMLFHLHSADHAGVEGQYHLLLQGVVAVTLAATVLGVAA 172
Query: 178 PXXXXXXXXXXXXXLFQGLWFIVMGFALWVPALVPRGCHGAEAGGGAMRSAVACPTDEAA 237
P + QG+WF+ MG +W PAL+P+GC + G + A +A
Sbjct: 173 PRSFAVSLVRSASLVLQGVWFLAMGVMMWTPALLPKGCFLSREDGHDVARCRADDGGDAL 232
Query: 238 RRAVVMANLQFSWVLAGVWAVTAYLCLRV 266
RA + NL+FSW L+G + L LR+
Sbjct: 233 ARAKALVNLEFSWYLSGTVVLVVALYLRL 261
>Os02g0167800
Length = 159
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 67 AIVDQLVDFPLLSFTIQPDALEHATMYLHLAVYXXXXXXXXXXXXXXXXXXXXXXXLGEV 126
AIVDQL+DFPLLSFTI+PDALEHATMYLHLAVY LG+V
Sbjct: 57 AIVDQLIDFPLLSFTIRPDALEHATMYLHLAVY--ASVALATDGVASSHHGDAQAQLGDV 114
Query: 127 VAALAASVFGQELF 140
VAALAASVFGQELF
Sbjct: 115 VAALAASVFGQELF 128
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,308,647
Number of extensions: 270971
Number of successful extensions: 953
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 6
Length of query: 308
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 207
Effective length of database: 11,762,187
Effective search space: 2434772709
Effective search space used: 2434772709
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)