BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0453800 Os08g0453800|J033064H14
         (83 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0453800  Protein kinase-like domain containing protein       144   1e-35
Os01g0958000  Similar to Cell division control protein 2 hom...    90   5e-19
Os05g0389700  Similar to Cell division control protein 2 hom...    86   4e-18

>Os08g0453800 Protein kinase-like domain containing protein
          Length = 83

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 69/83 (83%)

Query: 1  QEQLSKIFELCGFPNEENWPGVSKLPLYXXXXXXXXXXXXXXDIFHNFDSHAVDLIDRML 60
          QEQLSKIFELCGFPNEENWPGVSKLPLY              DIFHNFDSHAVDLIDRML
Sbjct: 1  QEQLSKIFELCGFPNEENWPGVSKLPLYKTIRPTTPTKRRLRDIFHNFDSHAVDLIDRML 60

Query: 61 ILNPTERISAHDALCAAYFITKM 83
          ILNPTERISAHDALCAAYFITKM
Sbjct: 61 ILNPTERISAHDALCAAYFITKM 83



>Os01g0958000 Similar to Cell division control protein 2 homolog 2 (EC 2.7.1.37)
           (Fragment)
          Length = 513

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 54/80 (67%)

Query: 2   EQLSKIFELCGFPNEENWPGVSKLPLYXXXXXXXXXXXXXXDIFHNFDSHAVDLIDRMLI 61
           EQLSKIFELCG P+E  WPGV+K+P Y              + F +FD HA+DL+++ML 
Sbjct: 248 EQLSKIFELCGTPDELIWPGVTKMPWYNNFKPQRPMKRRVKESFKHFDQHALDLLEKMLT 307

Query: 62  LNPTERISAHDALCAAYFIT 81
           L+P++RISA DAL A YF T
Sbjct: 308 LDPSQRISAKDALDAEYFWT 327



>Os05g0389700 Similar to Cell division control protein 2 homolog 2 (EC 2.7.1.37)
           (Fragment)
          Length = 519

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 2   EQLSKIFELCGFPNEENWPGVSKLPLYXXXXXXXXXXXXXXDIFHNFDSHAVDLIDRMLI 61
           EQLSKIF++CG P+E NWPGV+K+P Y              + F +FD  A+DL+++ML 
Sbjct: 248 EQLSKIFDVCGTPDESNWPGVTKMPWYNNFKPPRQLKRRVKEYFKHFDRLALDLLEKMLT 307

Query: 62  LNPTERISAHDALCAAYF 79
           L+P +RISA DAL A YF
Sbjct: 308 LDPAQRISAQDALDAEYF 325



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,231,839
Number of extensions: 52271
Number of successful extensions: 213
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 3
Length of query: 83
Length of database: 17,035,801
Length adjustment: 53
Effective length of query: 30
Effective length of database: 14,268,459
Effective search space: 428053770
Effective search space used: 428053770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)