BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0452500 Os08g0452500|AK106714
         (133 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0452500  Auxin responsive SAUR protein family protein        176   6e-45
Os09g0437100  Auxin responsive SAUR protein family protein        142   8e-35

>Os08g0452500 Auxin responsive SAUR protein family protein
          Length = 133

 Score =  176 bits (445), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 91/133 (68%)

Query: 1   MGKGGGLSKLRCMIRRWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGADEVPKGLHPV 60
           MGKGGGLSKLRCMIRRWH                            FHGADEVPKGLHPV
Sbjct: 1   MGKGGGLSKLRCMIRRWHSSSRIARAPPSAGELEEGSAAAAGRAASFHGADEVPKGLHPV 60

Query: 61  YVGKSRRRYLIAEELVGHPLFQNLVDRXXXXXXXXXXXXXXCEVVLFEHLLWMLENADPQ 120
           YVGKSRRRYLIAEELVGHPLFQNLVDR              CEVVLFEHLLWMLENADPQ
Sbjct: 61  YVGKSRRRYLIAEELVGHPLFQNLVDRTGGGGGGGAATVVGCEVVLFEHLLWMLENADPQ 120

Query: 121 PESLDELVEYYAC 133
           PESLDELVEYYAC
Sbjct: 121 PESLDELVEYYAC 133



>Os09g0437100 Auxin responsive SAUR protein family protein
          Length = 165

 Score =  142 bits (357), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 84/162 (51%), Gaps = 33/162 (20%)

Query: 5   GGLSKLRCMIRRWHXXXXXXXXXXXXXXXXXXXXXXXX---------------------- 42
           GGLSKL+CMI+RWH                                              
Sbjct: 4   GGLSKLKCMIKRWHSSSRISRTPSGCSASAGSTSARSSHGGGRVGGEEWGRSVVASGGGG 63

Query: 43  --------XXXXFHGADEVPKGLHPVYVGKSRRRYLIAEELVGHPLFQNLVDRX---XXX 91
                       FHGAD VP GLHPVYVGKSRRRYLIA +LVGHP+FQNLVDR       
Sbjct: 64  GGGGGGRGGSVSFHGADGVPPGLHPVYVGKSRRRYLIAADLVGHPMFQNLVDRSGGGGVG 123

Query: 92  XXXXXXXXXXCEVVLFEHLLWMLENADPQPESLDELVEYYAC 133
                     CEVVLFEHLLWMLENADPQPESLDELVEYYAC
Sbjct: 124 GGGGGGTVVGCEVVLFEHLLWMLENADPQPESLDELVEYYAC 165



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.144    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,645,793
Number of extensions: 86623
Number of successful extensions: 237
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 150 (62.4 bits)