BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0428100 Os08g0428100|Os08g0428100
         (338 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0428100  Cyclin-like F-box domain containing protein         544   e-155
Os04g0485800  Cyclin-like F-box domain containing protein          82   7e-16

>Os08g0428100 Cyclin-like F-box domain containing protein
          Length = 338

 Score =  544 bits (1402), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/316 (86%), Positives = 272/316 (86%)

Query: 23  GGEPHXXXXXXXXXXXXXXXXSCAGACRRLRDAVAGDPLLWXXXXXXXXXXXXXXTDEXX 82
           GGEPH                SCAGACRRLRDAVAGDPLLW              TDE  
Sbjct: 23  GGEPHAALLLSLAYLPLRELLSCAGACRRLRDAVAGDPLLWRRVAVAAPPLARRLTDEAL 82

Query: 83  XXXXXXXXXXXXSLRLLGCTRVSDAGLLRVVERNPGITEILSMESSTLLKDTMISTRAKI 142
                       SLRLLGCTRVSDAGLLRVVERNPGITEILSMESSTLLKDTMISTRAKI
Sbjct: 83  LALTGRAGGTLRSLRLLGCTRVSDAGLLRVVERNPGITEILSMESSTLLKDTMISTRAKI 142

Query: 143 YKLYMPRCTGLTAEGVVKIVQVLYECKGNLNRIRLHGICRMTKHHLDAISSAMCKGNQQE 202
           YKLYMPRCTGLTAEGVVKIVQVLYECKGNLNRIRLHGICRMTKHHLDAISSAMCKGNQQE
Sbjct: 143 YKLYMPRCTGLTAEGVVKIVQVLYECKGNLNRIRLHGICRMTKHHLDAISSAMCKGNQQE 202

Query: 203 DDQSLFYSHRVHEVLNTNDERRIDVDVCPMCTNVRLVFDCTRDGCRRKDSWAQCRGCFFC 262
           DDQSLFYSHRVHEVLNTNDERRIDVDVCPMCTNVRLVFDCTRDGCRRKDSWAQCRGCFFC
Sbjct: 203 DDQSLFYSHRVHEVLNTNDERRIDVDVCPMCTNVRLVFDCTRDGCRRKDSWAQCRGCFFC 262

Query: 263 VARCETCGGCIDLEELSETELACSDFLCMECWLPLPKCSTCNRPYCKRHENLKDSELFID 322
           VARCETCGGCIDLEELSETELACSDFLCMECWLPLPKCSTCNRPYCKRHENLKDSELFID
Sbjct: 263 VARCETCGGCIDLEELSETELACSDFLCMECWLPLPKCSTCNRPYCKRHENLKDSELFID 322

Query: 323 HVKFSGCRLHGLVQLV 338
           HVKFSGCRLHGLVQLV
Sbjct: 323 HVKFSGCRLHGLVQLV 338



>Os04g0485800 Cyclin-like F-box domain containing protein
          Length = 453

 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 37/277 (13%)

Query: 23  GGEPHXXXXXXXXXXXXXXXXSCAGACRRLRDAVAGDPLLWXXXXXXXXXXXXXXTDEXX 82
           GG PH                S    C+ L  AV  +PLLW                   
Sbjct: 197 GGVPHEGMLFALDYLGLRDILSVERVCKTLHSAVRNEPLLWKSIHIEG------------ 244

Query: 83  XXXXXXXXXXXXSLRLLGCTRVSDAGLLRVVERNPGITEILSMESSTLLKD----TMIST 138
                        LR     R+SDAGLL + ++ P   + LS+     + D     ++ +
Sbjct: 245 ------------DLR----QRISDAGLLHLTQKCPDTLQCLSIACCVNITDQGLKAVLES 288

Query: 139 RAKIYKLYMPRCTGLTAEGVVKIVQVL-YECKGNLNRIRLHGICRMTKHHLDAISSAMCK 197
             ++ KL +  C  LT +G++  ++    +    +  +R+  +  + K   + + S +  
Sbjct: 289 NPRLTKLSILGCPRLTLDGLISNLKSFNTKAVFGIKHLRVGTLFSLRKEQYEELLSLLNT 348

Query: 198 GNQQE-DDQSLFYSHRVHEVLNTNDERRIDVDVCPMCTNVRLVFDCTRDGCRRKDSWAQC 256
              QE  ++   + H    + + ND   +D+++CP+C N +LV+DC  +GC  + S   C
Sbjct: 349 DKTQEVHNRGPRFLHANRFLSDCNDGYALDIEMCPICQNYKLVYDCPDEGCDDRRS-GNC 407

Query: 257 RGCFFCVARCETCGGCIDLEELSETELACSDFLCMEC 293
           +GC  C+ RC  CG C+D  +L+  E    D++C  C
Sbjct: 408 KGCTVCILRCYECGRCVD--KLAFKESFSLDWVCPNC 442



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.139    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,529,326
Number of extensions: 365127
Number of successful extensions: 1032
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1030
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 237
Effective length of database: 11,762,187
Effective search space: 2787638319
Effective search space used: 2787638319
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)