Os08g0428100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os08g0428100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.05 | 0.54 | 7.57 | 1.95 | 0.624 | -2.38 | -1.91 | 3.01 | 0.0371 | 4.57 | 21.02 | 888 | -- | -- |
| 136.9 | 0.545 | 7.64 | 1.25 | 0.695 | -2.2 | -1.85 | -- | -0.16 | 5.15 | 19.76 | 893 | -- | -- |
| 140.42 | 0.552 | 7.54 | 2.2 | 0.734 | -2.33 | -- | 3.82 | 0.103 | 5.25 | 21.4 | 934 | -- | -- |
| 144.83 | 0.56 | 7.65 | 1.23 | 0.808 | -2.02 | -- | -- | -0.184 | 5.93 | 19.95 | 965 | -- | -- |
| 152.3 | 0.575 | 7.54 | 2.11 | -- | -2.54 | -- | 3.87 | 0.115 | -- | 20.97 | 728 | -- | -- |
| 243.47 | 0.732 | 7.72 | 0.61 | 1.06 | -- | -0.396 | -- | -0.572 | 7.48 | -- | -- | -- | -- |
| 243.79 | 0.731 | 7.72 | 0.603 | 1.05 | -- | -- | -- | -0.57 | 7.64 | -- | -- | -- | -- |
| 160.19 | 0.589 | 7.65 | 1.29 | -- | -2.44 | -- | -- | -0.114 | -- | 19.3 | 732 | -- | -- |
| 179.92 | 0.625 | 7.68 | -- | 0.835 | -1.65 | -- | -- | -0.373 | 6.24 | 21.03 | 951 | -- | -- |
| 303.4 | 0.814 | 7.74 | 0.617 | -- | -- | -- | -- | -0.555 | -- | -- | -- | -- | -- |
| 253.37 | 0.745 | 7.73 | -- | 1.06 | -- | -- | -- | -0.637 | 7.6 | -- | -- | -- | -- |
| 198.57 | 0.656 | 7.69 | -- | -- | -2.02 | -- | -- | -0.324 | -- | 20.8 | 723 | -- | -- |
| 313.45 | 0.826 | 7.76 | -- | -- | -- | -- | -- | -0.623 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 4 | 126.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 10 | 127.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 21 | 128.39 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 37 | 129.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 43 | 130.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 76 | 131.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 91 | 132.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 92 | 132.27 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 115 | 132.94 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 132 | 133.49 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 149 | 133.84 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 18 |
| 189 | 134.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 192 | 135.03 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 211 | 135.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 296 | 136.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 319 | 137.32 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 412 | 138.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 428 | 139.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 544 | 140.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 558 | 140.50 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 652 | 141.10 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 20 |
| 665 | 141.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 691 | 141.32 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 909 | 142.58 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 941 | 142.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 988 | 143.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 998 | 143.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |