BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0428100 Os08g0428100|Os08g0428100
         (338 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01620.1  | chr2:278204-279226 FORWARD LENGTH=293              127   1e-29
AT3G26000.1  | chr3:9507042-9508542 REVERSE LENGTH=454             97   1e-20
AT3G27290.1  | chr3:10080038-10081265 REVERSE LENGTH=383           79   3e-15

>AT2G01620.1 | chr2:278204-279226 FORWARD LENGTH=293
          Length = 292

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 120/266 (45%), Gaps = 52/266 (19%)

Query: 50  RRLRDAVAGDPLLWXXXXXXXXXXXXXXTDEXXXXXXXXXXXXXXSLRLLGCTRVSDAGL 109
           R LRDA+  +  LW              TD+              +L L  C  V++ GL
Sbjct: 41  RSLRDAIRDETALWTKLVIEPPLSSRL-TDDILSEFSSKSAGKLKTLILRQCLMVTNKGL 99

Query: 110 LRVVERNPGITEILSMESSTLLKDTMISTRAKIYKLYMPRCTGLTAEGVVKIVQVLYECK 169
            RVV+ NP IT+I+                       +P C+GLT EG+++ V+ L +  
Sbjct: 100 RRVVDANPLITKII-----------------------VPGCSGLTPEGIMECVESLSKNN 136

Query: 170 GNLNRIRLHGICRMTKHHLDAISSAMCKGNQQEDDQSLFYSHRVHEVLNTNDERRIDVDV 229
             L  + ++G+   TK HL A+ + +                        + E  ID++V
Sbjct: 137 HKLETLHINGVNGFTKQHLSALYTYL------------------------SSEGTIDLEV 172

Query: 230 CPMCTNVRLVFDCTRDGCRRKDSWAQCRGCFFCVARCETCGGCIDLEELSETELACS--D 287
           CP C  VR++  C+R+ C +K    +CRGC+ C+ RC  C  C+   +    E AC   D
Sbjct: 173 CPKCDEVRMIPSCSRESCNQKQR--KCRGCWLCIPRCAECAVCLVGSDTESQEAACGNDD 230

Query: 288 FLCMECWLPLPKCSTCNRPYCKRHEN 313
            LC+ECWL LPKC  CN+PYC  H +
Sbjct: 231 VLCLECWLVLPKCRFCNKPYCTNHSS 256



>AT3G26000.1 | chr3:9507042-9508542 REVERSE LENGTH=454
          Length = 453

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 117/259 (45%), Gaps = 29/259 (11%)

Query: 44  SCAGACRRLRDAVAGDPLLWXXXXXXXXXXXXXXTDEXXXXXXXXXXXXXXSLRLLGCTR 103
           S +  C+ L   V  D LLW              T+E               LR++ C R
Sbjct: 218 SVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKI-TEEALLHLTERAQGTMQCLRIVDCCR 276

Query: 104 VSDAGLLRVVERNPGITEILSMESSTLLKDTMISTRAKIYKLYMPRCTGLTAEGVVKIVQ 163
           ++D  L RVV RN                        ++ K+ +P CT +T +G++ +++
Sbjct: 277 ITDDCLKRVVARN-----------------------RQVVKIGVPGCTRITIDGILSVLR 313

Query: 164 VLYEC-KGNLNRIRLHGICRMTKHHLDAISSAMCKGNQ-QEDDQSLFYSHRVHEVLNTND 221
            L    K  +  ++L G+  +TK H D +   +   N+ ++  Q   + HR    ++ +D
Sbjct: 314 DLKSAGKLQVKHLQLRGLFGVTKDHYDELIDLLNIDNKVKQTIQKPRFYHRGEACVSCDD 373

Query: 222 ERRIDVDVCPMCTNVRLVFDCTRDGCR-RKDSWAQCRGCFFCVARCETCGGCIDLEELSE 280
           +R +D+++CP C N +LV+DC  + C+ +K    +CR C  C+ RC  CG CI   E   
Sbjct: 374 DRALDIEMCPKCQNFKLVYDCPAEDCKGKKKGSEECRACSLCIQRCYHCGRCIIDTEYE- 432

Query: 281 TELACSDFLCMECWLPLPK 299
            E+ C + LC  C  P PK
Sbjct: 433 -EMFCLELLCAVCSKPTPK 450



>AT3G27290.1 | chr3:10080038-10081265 REVERSE LENGTH=383
          Length = 382

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 97/254 (38%), Gaps = 36/254 (14%)

Query: 48  ACRRLRDAVAGDPLLWXXXXXXXXXXXXXXTDEXXXXXXXXXXXXXXSLRLLGCTRVSDA 107
            CR LRD+V  +P  W              TDE               L L GC  ++D 
Sbjct: 149 VCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLLKLTRRALGGVRCLNLGGCVGITDY 208

Query: 108 GLLRVVERNPGITEILSMESSTLLKDTMISTRAKIYKLYMPRCTGLTAEGVVKIVQVLYE 167
           GL +V+  NP +T                       KL +  C  L+  G+V  ++ L  
Sbjct: 209 GLKQVLASNPHLT-----------------------KLSVSGCLRLSTAGLVSTLRDLKS 245

Query: 168 C-KGNLNRIRLHGICRMTKHH---LDAISSAMCKGNQQEDDQSLFYSHRVHEVLNTNDER 223
             +  +  +   G    TK     L+ +     K   QE  +  + S R    L   D+R
Sbjct: 246 SNRLGVKSLITGGALYFTKEQFKELNLLLGGDAKVGLQERKKRFYTSCRSEFYLE--DDR 303

Query: 224 RIDVDVCPMCTNVRLVFDCTRDGCRRKDSW----AQCRGCFFCVARCETCGGCIDLEELS 279
             D+++CP C    LVFDC  D C  K  +    + CR C  C+ RC  CG C++     
Sbjct: 304 VTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECGSCLN---DC 360

Query: 280 ETELACSDFLCMEC 293
           E +  C  F C+ C
Sbjct: 361 ENKPFCFAFSCVVC 374



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.139    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,103,293
Number of extensions: 241967
Number of successful extensions: 726
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 239
Effective length of database: 8,392,385
Effective search space: 2005780015
Effective search space used: 2005780015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)