Os04g0485800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os04g0485800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.95 | 0.304 | 10.9 | 0.136 | 0.713 | -0.91 | 0.293 | 9.25 | -0.124 | 5.58 | 30.7 | 34 | -- | -- |
| 49.03 | 0.326 | 11 | -0.47 | 0.73 | 0.242 | 0.273 | -- | -0.111 | 5.44 | 32.1 | 41 | -- | -- |
| 42.15 | 0.302 | 10.9 | 0.136 | 0.713 | -0.915 | -- | 9.21 | -0.126 | 5.54 | 30.71 | 32 | -- | -- |
| 49.18 | 0.327 | 11 | -0.474 | 0.74 | 0.228 | -- | -- | -0.11 | 5.43 | 32.1 | 121 | -- | -- |
| 66.71 | 0.38 | 10.9 | 0.189 | -- | -1.17 | -- | 9.15 | -0.126 | -- | 30.6 | 33 | -- | -- |
| 49.87 | 0.331 | 11 | -0.456 | 0.697 | -- | 0.208 | -- | -0.121 | 5.51 | -- | -- | -- | -- |
| 49.97 | 0.331 | 11 | -0.456 | 0.699 | -- | -- | -- | -0.122 | 5.46 | -- | -- | -- | -- |
| 69.77 | 0.389 | 11 | -0.352 | -- | -0.276 | -- | -- | -0.101 | -- | 28.1 | 72 | -- | -- |
| 53.25 | 0.34 | 11 | -- | 0.678 | 0.213 | -- | -- | -0.0572 | 5.68 | 31.5 | 4348 | -- | -- |
| 75.37 | 0.406 | 11 | -0.432 | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
| 55.45 | 0.348 | 11 | -- | 0.691 | -- | -- | -- | -0.0709 | 5.49 | -- | -- | -- | -- |
| 69.36 | 0.388 | 11 | -- | -- | -0.437 | -- | -- | 0.00493 | -- | 27.58 | 366 | -- | -- |
| 80.3 | 0.418 | 11 | -- | -- | -- | -- | -- | -0.0566 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 40.66 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 5 | 41.82 | temperature | 30 | 30 | > th | dose independent | rect. | 11 | 1 |
| 9 | 41.86 | temperature | 30 | 10 | > th | dose independent | rect. | 14 | 22 |
| 50 | 42.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 54 | 42.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 58 | 42.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 59 | 42.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 66 | 42.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 96 | 42.65 | temperature | 30 | 30 | > th | dose independent | sin | 7 | NA |
| 172 | 43.01 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 2 |
| 220 | 43.24 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 225 | 43.29 | temperature | 30 | 10 | > th | dose dependent | rect. | 16 | 21 |
| 305 | 43.53 | temperature | 30 | 30 | < th | dose independent | sin | 6 | NA |
| 311 | 43.62 | temperature | 30 | 10 | > th | dose dependent | sin | 7 | NA |
| 317 | 43.78 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 344 | 43.91 | temperature | 30 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 347 | 43.95 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 425 | 44.33 | temperature | 30 | 30 | > th | dose independent | rect. | 10 | 8 |
| 478 | 44.44 | temperature | 30 | 30 | > th | dose independent | no | NA | NA |
| 643 | 44.62 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 647 | 44.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 760 | 44.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 783 | 44.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 789 | 44.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 819 | 44.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 822 | 44.85 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 823 | 44.85 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 904 | 44.89 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 912 | 44.89 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 939 | 44.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 945 | 44.91 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 963 | 44.92 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 964 | 44.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 965 | 44.92 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 991 | 44.93 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 4 |