BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0485800 Os04g0485800|AK100299
(453 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26000.1 | chr3:9507042-9508542 REVERSE LENGTH=454 247 1e-65
AT3G27290.1 | chr3:10080038-10081265 REVERSE LENGTH=383 169 2e-42
AT2G01620.1 | chr2:278204-279226 FORWARD LENGTH=293 101 8e-22
>AT3G26000.1 | chr3:9507042-9508542 REVERSE LENGTH=454
Length = 453
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 216/411 (52%), Gaps = 38/411 (9%)
Query: 63 DPVDLLPTDPFGMNLETTFTAAIASCIEDLT--VMSSAGR-------FGDSRDDAVFADL 113
D +D+LP+DPFGM++ TFTA I +EDL + GR GD +FA L
Sbjct: 45 DILDVLPSDPFGMDINNTFTA-ITGWLEDLEDDYNNQYGRRRRDDIWIGDGNRQQLFAGL 103
Query: 114 SYYLNKAFVLSPEFQFGG----YRGVFEGPL--------------GFGGLSAGEGDSFGF 155
S++ N A G + G F+G L GFGG G+G G
Sbjct: 104 SFFWNNAMQFQSSGYSYGSESLFGGAFDGSLFSTCKFPESSGENNGFGGALDGDGSCHGA 163
Query: 156 MKNPSSSGNADDSFGFVETPPTSGNAALECGDAXXXXXXXXXXXXXXXMLFALDYLGLRD 215
+ SS V + + N + G + + F L +L +D
Sbjct: 164 FISASSVDE-------VLSHENARNGEV-VGSSDRCNNGEEDAYVHPAIGFCLYHLRGKD 215
Query: 216 ILSVERVCKTLHSAVRNEPLLWKSIHIEGDLRQRISDAGLLHLTQKCPDTLQCLSIACCV 275
+LSV VCK+LH+ V ++ LLWK IHI L ++I++ LLHLT++ T+QCL I C
Sbjct: 216 LLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEALLHLTERAQGTMQCLRIVDCC 275
Query: 276 NITDQGLKAVLESNPRLTKLSILGCPRLTLDGLISNLKSFNTKAVFGIKHLRVGTLFSLR 335
ITD LK V+ N ++ K+ + GC R+T+DG++S L+ + +KHL++ LF +
Sbjct: 276 RITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDLKSAGKLQVKHLQLRGLFGVT 335
Query: 336 KEQYEELLSLLNTDKTQEVHNRGPRFLHANRFLSDCNDGYALDIEMCPICQNYKLVYDCP 395
K+ Y+EL+ LLN D + + PRF H C+D ALDIEMCP CQN+KLVYDCP
Sbjct: 336 KDHYDELIDLLNIDNKVKQTIQKPRFYHRGEACVSCDDDRALDIEMCPKCQNFKLVYDCP 395
Query: 396 DEGCDDRRSGN--CKGCTVCILRCYECGRCVDKLAFKESFSLDWVCPNCQE 444
E C ++ G+ C+ C++CI RCY CGRC+ ++E F L+ +C C +
Sbjct: 396 AEDCKGKKKGSEECRACSLCIQRCYHCGRCIIDTEYEEMFCLELLCAVCSK 446
>AT3G27290.1 | chr3:10080038-10081265 REVERSE LENGTH=383
Length = 382
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 136/247 (55%), Gaps = 7/247 (2%)
Query: 206 FALDYLGLRDILSVERVCKTLHSAVRNEPLLWKSIHIEGD-LRQRISDAGLLHLTQKCPD 264
L YL L++IL+VE VC++L +V EP W SI + L+ R++D LL LT++
Sbjct: 133 LVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLLKLTRRALG 192
Query: 265 TLQCLSIACCVNITDQGLKAVLESNPRLTKLSILGCPRLTLDGLISNLKSFNTKAVFGIK 324
++CL++ CV ITD GLK VL SNP LTKLS+ GC RL+ GL+S L+ + G+K
Sbjct: 193 GVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLKSSNRLGVK 252
Query: 325 HLRVGTLFSLRKEQYEELLSLLNTDKTQEVHNRGPRFLHANRFLSDCNDGYALDIEMCPI 384
L G KEQ++EL LL D + R RF + R D D+E+CP
Sbjct: 253 SLITGGALYFTKEQFKELNLLLGGDAKVGLQERKKRFYTSCRSEFYLEDDRVTDLEICPW 312
Query: 385 CQNYKLVYDCPDEGCDDR-----RSGNCKGCTVCILRCYECGRCVDKLAFKESFSLDWVC 439
C+ LV+DCP + C + +C+ C VCI RC+ECG C++ K F + C
Sbjct: 313 CEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECGSCLNDCENK-PFCFAFSC 371
Query: 440 PNCQEKK 446
C EK+
Sbjct: 372 VVCIEKR 378
>AT2G01620.1 | chr2:278204-279226 FORWARD LENGTH=293
Length = 292
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 28/222 (12%)
Query: 204 MLFALDYL-GLRDILSVERVCKTLHSAVRNEPLLWKSIHIEGDLRQRISDAGLLHLTQKC 262
+L L YL L ++LS+ RV ++L A+R+E LW + IE L R++D L + K
Sbjct: 20 LLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFSSKS 79
Query: 263 PDTLQCLSIACCVNITDQGLKAVLESNPRLTKLSILGCPRLTLDGLISNLKSFNTKAVFG 322
L+ L + C+ +T++GL+ V+++NP +TK+ + GC LT +G++ ++S +K
Sbjct: 80 AGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESL-SKNNHK 138
Query: 323 IKHLRVGTLFSLRKEQYEELLSLLNTDKTQEVHNRGPRFLHANRFLSDCNDGYALDIEMC 382
++ L + + K+ L + L+++ T +D+E+C
Sbjct: 139 LETLHINGVNGFTKQHLSALYTYLSSEGT-------------------------IDLEVC 173
Query: 383 PICQNYKLVYDCPDEGCDDRRSGNCKGCTVCILRCYECGRCV 424
P C +++ C E C+ ++ C+GC +CI RC EC C+
Sbjct: 174 PKCDEVRMIPSCSRESCNQKQR-KCRGCWLCIPRCAECAVCL 214
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,185,898
Number of extensions: 432296
Number of successful extensions: 1301
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 4
Length of query: 453
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 351
Effective length of database: 8,310,137
Effective search space: 2916858087
Effective search space used: 2916858087
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)