BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0425000 Os08g0425000|AK105302
(547 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0425000 Conserved hypothetical protein 996 0.0
Os09g0392000 Conserved hypothetical protein 811 0.0
Os01g0793500 Conserved hypothetical protein 639 0.0
>Os08g0425000 Conserved hypothetical protein
Length = 547
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/507 (94%), Positives = 478/507 (94%)
Query: 41 FRARDLLPLLPRGLTWPAVGSVHSAVDLLPRFVAHVAPEASSAVAWRATCFADNEAVLTL 100
FRARDLLPLLPRGLTWPAVGSVHSAVDLLPRFVAHVAPEASSAVAWRATCFADNEAVLTL
Sbjct: 41 FRARDLLPLLPRGLTWPAVGSVHSAVDLLPRFVAHVAPEASSAVAWRATCFADNEAVLTL 100
Query: 101 THXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQSWTCMDLYVFATPYRIGWDYYITAQE 160
TH SAQSWTCMDLYVFATPYRIGWDYYITAQE
Sbjct: 101 THSSSAAAAGRNATTAGAAALGGALLRLKTASAQSWTCMDLYVFATPYRIGWDYYITAQE 160
Query: 161 HTFEIKAWEEPGEMEYVKQHGIAIFLMPSGMLGTLLSLIDVIPLFSNTIWGQDANLAFLQ 220
HTFEIKAWEEPGEMEYVKQHGIAIFLMPSGMLGTLLSLIDVIPLFSNTIWGQDANLAFLQ
Sbjct: 161 HTFEIKAWEEPGEMEYVKQHGIAIFLMPSGMLGTLLSLIDVIPLFSNTIWGQDANLAFLQ 220
Query: 221 KHMGASFEKRTQPWSANIRKEDVHSGDFLALSKIRGRWGGFQTLEKWVTGAFAGHTAVCL 280
KHMGASFEKRTQPWSANIRKEDVHSGDFLALSKIRGRWGGFQTLEKWVTGAFAGHTAVCL
Sbjct: 221 KHMGASFEKRTQPWSANIRKEDVHSGDFLALSKIRGRWGGFQTLEKWVTGAFAGHTAVCL 280
Query: 281 KDENGTLWVAESGYENKKGEEVIAIVPWDEWWGMALKDDSNPQVAFLPLHPDVRARFNET 340
KDENGTLWVAESGYENKKGEEVIAIVPWDEWWGMALKDDSNPQVAFLPLHPDVRARFNET
Sbjct: 281 KDENGTLWVAESGYENKKGEEVIAIVPWDEWWGMALKDDSNPQVAFLPLHPDVRARFNET 340
Query: 341 AAWEFARSMYGKPYGYHNMIFSWIDTMSDNYPPPLDANLVMAVMSMWTRLQPLYASNMWN 400
AAWEFARSMYGKPYGYHNMIFSWIDTMSDNYPPPLDANLVMAVMSMWTRLQPLYASNMWN
Sbjct: 341 AAWEFARSMYGKPYGYHNMIFSWIDTMSDNYPPPLDANLVMAVMSMWTRLQPLYASNMWN 400
Query: 401 EALNKRLGTEKLDLHGIITETGKRGMSFNQLLTIPEQDDWEYSDGKSTTCVAFILSMYKK 460
EALNKRLGTEKLDLHGIITETGKRGMSFNQLLTIPEQDDWEYSDGKSTTCVAFILSMYKK
Sbjct: 401 EALNKRLGTEKLDLHGIITETGKRGMSFNQLLTIPEQDDWEYSDGKSTTCVAFILSMYKK 460
Query: 461 AGVFAPFTESIQVTEFTIRDAYMLKIFEDNQTRLPSWCNSGADRLPFCQILGEYKMELPE 520
AGVFAPFTESIQVTEFTIRDAYMLKIFEDNQTRLPSWCNSGADRLPFCQILGEYKMELPE
Sbjct: 461 AGVFAPFTESIQVTEFTIRDAYMLKIFEDNQTRLPSWCNSGADRLPFCQILGEYKMELPE 520
Query: 521 YNTIEPYANMNENCPSSPPTYTRPLGC 547
YNTIEPYANMNENCPSSPPTYTRPLGC
Sbjct: 521 YNTIEPYANMNENCPSSPPTYTRPLGC 547
>Os09g0392000 Conserved hypothetical protein
Length = 546
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/509 (76%), Positives = 428/509 (84%), Gaps = 12/509 (2%)
Query: 40 PFRARDLLPLLPRGLTWPAVGSVHSAVDLLPRFVAHVAPEAS-SAVAWRATCFADNEAVL 98
PF D+LP+LPR ++WP + ++HSAVDLLP FVA VAP A+ S AW CFA NEA L
Sbjct: 49 PFSPGDVLPVLPRQVSWPVMNTLHSAVDLLPSFVAAVAPGAAPSDAAWSGACFARNEAAL 108
Query: 99 TLTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQSWTCMDLYVFATPYRIGWDYYITA 158
LT SA+SWTCMDLYVFATPYRI WDYY A
Sbjct: 109 ELT-----------PGDRNGTELSGAVLRLKTASAKSWTCMDLYVFATPYRITWDYYFAA 157
Query: 159 QEHTFEIKAWEEPGEMEYVKQHGIAIFLMPSGMLGTLLSLIDVIPLFSNTIWGQDANLAF 218
+EHT EIK+WEE E+EYVKQHGI++FLMPSGMLGTLLSLIDV+PLFSNT WGQ +NLAF
Sbjct: 158 REHTLEIKSWEEEAELEYVKQHGISVFLMPSGMLGTLLSLIDVLPLFSNTGWGQHSNLAF 217
Query: 219 LQKHMGASFEKRTQPWSANIRKEDVHSGDFLALSKIRGRWGGFQTLEKWVTGAFAGHTAV 278
L+KHMGASFEKR+QPW IRKED+HSGDFLALSKIRGRWG F+TLEKWVTGAFAGHTAV
Sbjct: 218 LEKHMGASFEKRSQPWVTTIRKEDIHSGDFLALSKIRGRWGAFETLEKWVTGAFAGHTAV 277
Query: 279 CLKDENGTLWVAESGYENKKGEEVIAIVPWDEWWGMALKDDSNPQVAFLPLHPDVRARFN 338
CLKDE G +WVAESG+EN+KGEE+I IVPWDEWW MALKD SNPQ+A LPLHPDVRARFN
Sbjct: 278 CLKDEKGEVWVAESGFENEKGEEIIVIVPWDEWWAMALKDSSNPQIALLPLHPDVRARFN 337
Query: 339 ETAAWEFARSMYGKPYGYHNMIFSWIDTMSDNYPPPLDANLVMAVMSMWTRLQPLYASNM 398
E+AAW++ARSM GKPYGYHNMIFSWIDT+ DNYPPPLDANLVMAVMSMWTRLQPLYA+NM
Sbjct: 338 ESAAWDYARSMVGKPYGYHNMIFSWIDTIGDNYPPPLDANLVMAVMSMWTRLQPLYAANM 397
Query: 399 WNEALNKRLGTEKLDLHGIITETGKRGMSFNQLLTIPEQDDWEYSDGKSTTCVAFILSMY 458
WNEALNKRLGTE LDLHGII ET +RGMSF+QLLTIPEQD+W YSDGKSTTCVAFIL+MY
Sbjct: 398 WNEALNKRLGTEGLDLHGIIVETERRGMSFDQLLTIPEQDEWVYSDGKSTTCVAFILAMY 457
Query: 459 KKAGVFAPFTESIQVTEFTIRDAYMLKIFEDNQTRLPSWCNSGADRLPFCQILGEYKMEL 518
K+AG+F PF ESIQVTEFTIRDAYMLKIFEDNQ RLPSWCN+ +D+LPFCQILGEY+MEL
Sbjct: 458 KEAGIFTPFAESIQVTEFTIRDAYMLKIFEDNQARLPSWCNTESDKLPFCQILGEYRMEL 517
Query: 519 PEYNTIEPYANMNENCPSSPPTYTRPLGC 547
PEYNTIEPYA MNENCPS PPTY RP C
Sbjct: 518 PEYNTIEPYAKMNENCPSLPPTYKRPARC 546
>Os01g0793500 Conserved hypothetical protein
Length = 539
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/493 (60%), Positives = 369/493 (74%), Gaps = 20/493 (4%)
Query: 61 SVHSAVDLLPRFVAHVAPE----ASSAVAWRATCFADNEAVLTLTHXXXXXXXXXXXXXX 116
++ A DLLP FV VA E + A W+ CF DN A + +
Sbjct: 61 ALRGAADLLPSFVG-VAREPGDGGARAAEWKGACFYDNRAWMEFHNGTDGGLGGGTLHLE 119
Query: 117 XXXXXXXXXXXXXXXSAQSWTCMDLYVFATPYRIGWDYYITAQEHTFEIKAWEEPGEMEY 176
A SWTC+DLYVFATPYR+ WDYY +EHT + K WE E EY
Sbjct: 120 TN-------------KAHSWTCIDLYVFATPYRVTWDYYFVGREHTLDFKEWESEAEYEY 166
Query: 177 VKQHGIAIFLMPSGMLGTLLSLIDVIPLFSNTIWGQDANLAFLQKHMGASFEKRTQPWSA 236
VK+ G++IFLMPSG +GTL +L DV PLF+NT WG+++NLAFL+KHMGA+FE+R +PW +
Sbjct: 167 VKRKGVSIFLMPSGTIGTLRALWDVFPLFTNTQWGENSNLAFLKKHMGATFEERPKPWVS 226
Query: 237 NIRKEDVHSGDFLALSKIRGRWGGFQTLEKWVTGAFAGHTAVCLKDENGTLWVAESGYEN 296
+ +D+HSGDFL LSKIRGRWGGF+TLEKWVTGA+AGHTAVCL+D G LWV ESG+EN
Sbjct: 227 ELNVDDIHSGDFLVLSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHEN 286
Query: 297 KKGEEVIAIVPWDEWWGMALK-DDSNPQVAFLPLHPDVRARFNETAAWEFARSMYGKPYG 355
++GE++IAI+PW+EWW +K DDSNPQ+A LPLHPD+RA+FNETAAWE+A+SM GKPYG
Sbjct: 287 EQGEDIIAILPWEEWWDFEVKKDDSNPQIALLPLHPDLRAKFNETAAWEYAKSMDGKPYG 346
Query: 356 YHNMIFSWIDTMSDNYPPPLDANLVMAVMSMWTRLQPLYASNMWNEALNKRLGTEKLDLH 415
YHNMIFSWIDT+SDNYPPPLDA++V +VM+MW +LQP YA+NMW EALNKRLGT+ LDL
Sbjct: 347 YHNMIFSWIDTISDNYPPPLDAHVVASVMTMWNKLQPEYAANMWKEALNKRLGTKGLDLP 406
Query: 416 GIITETGKRGMSFNQLLTIPEQDDWEYSDGKSTTCVAFILSMYKKAGVFAPFTESIQVTE 475
II E+ KRGM+F++LLT+PEQD W Y+DG+S +CVA++L MYK+AG+F P SI+VTE
Sbjct: 407 EIIVESEKRGMTFDKLLTVPEQDKWVYTDGQSASCVAYVLMMYKEAGLFDPIASSIEVTE 466
Query: 476 FTIRDAYMLKIFEDNQTRLPSWCNSGAD-RLPFCQILGEYKMELPEYNTIEPYANMNENC 534
FTI+DAY L FE+N TRLP WCN +LPFCQI G Y+MELP YNT++PY +MNE C
Sbjct: 467 FTIKDAYSLNFFENNMTRLPVWCNKDDSVKLPFCQIKGRYRMELPGYNTMQPYPHMNERC 526
Query: 535 PSSPPTYTRPLGC 547
PS PP Y RP C
Sbjct: 527 PSLPPNYNRPRNC 539
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,732,502
Number of extensions: 716513
Number of successful extensions: 1495
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1491
Number of HSP's successfully gapped: 4
Length of query: 547
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 441
Effective length of database: 11,501,117
Effective search space: 5071992597
Effective search space used: 5071992597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)