Os08g0425000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0425000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.41 | 0.578 | 7.02 | -0.362 | 1.89 | 0.984 | -1.23 | 4.7 | -0.158 | 9.88 | 21.83 | 2482 | -- | -- |
| 162.85 | 0.594 | 7.07 | -1.49 | 1.83 | 1.44 | -1.62 | -- | -0.0219 | 9.68 | 29.54 | 3430 | -- | -- |
| 156.62 | 0.583 | 7 | -0.266 | 1.91 | 0.959 | -- | 5.33 | -0.12 | 9.8 | 22.14 | 2370 | -- | -- |
| 170.33 | 0.608 | 7.09 | -1.7 | 1.94 | 1.54 | -- | -- | -0.104 | 9.66 | 29.1 | 2189 | -- | -- |
| 338.4 | 0.861 | 7.27 | -1.99 | -- | 1.86 | -- | -1.85 | -0.622 | -- | 21.97 | 3006 | -- | -- |
| 223.98 | 0.702 | 7.13 | -1.29 | 1.74 | -- | -1.68 | -- | -0.269 | 9.64 | -- | -- | -- | -- |
| 234.52 | 0.717 | 7.13 | -1.36 | 1.75 | -- | -- | -- | -0.272 | 9.58 | -- | -- | -- | -- |
| 341.27 | 0.864 | 7.24 | -1.69 | -- | 1.74 | -- | -- | -0.533 | -- | 21.97 | 3006 | -- | -- |
| 242.01 | 0.725 | 7.04 | -- | 1.86 | 1.14 | -- | -- | 0.0974 | 9.72 | 30.14 | 2136 | -- | -- |
| 416.04 | 0.953 | 7.18 | -1.37 | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
| 283.06 | 0.787 | 7.09 | -- | 1.76 | -- | -- | -- | -0.121 | 9.63 | -- | -- | -- | -- |
| 414.15 | 0.951 | 7.18 | -- | -- | 1.42 | -- | -- | -0.303 | -- | 21.97 | 3006 | -- | -- |
| 465.59 | 1.01 | 7.14 | -- | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 4 | 150.97 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 5 | 151.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 28 | 152.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 14 |
| 55 | 152.45 | temperature | 20 | 4320 | > th | dose dependent | sin | 11 | NA |
| 56 | 152.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 77 | 152.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 99 | 152.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 119 | 152.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 217 | 154.04 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 247 | 154.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 289 | 154.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 294 | 154.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 299 | 154.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 301 | 154.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 343 | 154.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 401 | 155.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 406 | 155.14 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 408 | 155.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 20 |
| 431 | 155.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 440 | 155.18 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 472 | 155.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 514 | 155.31 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 535 | 155.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 594 | 155.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 16 |
| 603 | 155.52 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 628 | 155.58 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 679 | 155.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 715 | 155.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 6 |
| 850 | 156.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 851 | 156.03 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 895 | 156.12 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 900 | 156.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 927 | 156.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 17 |