BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0425000 Os08g0425000|AK105302
(547 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G70160.1 | chr1:26420159-26422345 FORWARD LENGTH=524 752 0.0
AT4G27020.1 | chr4:13568604-13571381 REVERSE LENGTH=524 667 0.0
AT5G54870.1 | chr5:22289149-22291604 FORWARD LENGTH=532 647 0.0
>AT1G70160.1 | chr1:26420159-26422345 FORWARD LENGTH=524
Length = 523
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/508 (68%), Positives = 405/508 (79%), Gaps = 12/508 (2%)
Query: 40 PFRARDLLPLLPRGLTWPAVGSVHSAVDLLPRFVAHVAPEASSAVAWRATCFADNEAVLT 99
PF D+LP+LPR ++WP + S H+AVDLLP F+ V P S + W+ CF NEA L
Sbjct: 28 PFSVNDVLPMLPRQVSWPVLNSFHNAVDLLPVFIGSVTPNNVS-IEWKGACFNGNEARLD 86
Query: 100 LTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQSWTCMDLYVFATPYRIGWDYYITAQ 159
+T A S TCMDLYVFATPYRI WDYY +A+
Sbjct: 87 IT-----------GSDRDVPGLGGGVLHLKTSKAHSLTCMDLYVFATPYRITWDYYFSAR 135
Query: 160 EHTFEIKAWEEPGEMEYVKQHGIAIFLMPSGMLGTLLSLIDVIPLFSNTIWGQDANLAFL 219
+HT +WEE E+EYVK+HG+++FLMPSGMLGTLLSLIDV+PLFSNT WGQ+ANLAFL
Sbjct: 136 DHTLNFDSWEEKAELEYVKEHGVSVFLMPSGMLGTLLSLIDVLPLFSNTAWGQNANLAFL 195
Query: 220 QKHMGASFEKRTQPWSANIRKEDVHSGDFLALSKIRGRWGGFQTLEKWVTGAFAGHTAVC 279
KHMGA+FEKR+QPW + I EDVHSGDFLA+SKIRGRWGGF+TLEKWVTGAFAGHTAVC
Sbjct: 196 TKHMGATFEKRSQPWRSMINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVC 255
Query: 280 LKDENGTLWVAESGYENKKGEEVIAIVPWDEWWGMALKDDSNPQVAFLPLHPDVRARFNE 339
LKD+ G LWV ESG+EN+KGEE+I ++PWDEWW + LKD+SNPQVA LPLHPD+RA+FN
Sbjct: 256 LKDDLGNLWVGESGHENEKGEEIIVVIPWDEWWELTLKDNSNPQVALLPLHPDIRAKFNN 315
Query: 340 TAAWEFARSMYGKPYGYHNMIFSWIDTMSDNYPPPLDANLVMAVMSMWTRLQPLYASNMW 399
TAAWE+ARSM GKPYGYHNMIFSWIDT+ DNYPPPLDA+LV++VMSMWTR+QP YA+NMW
Sbjct: 316 TAAWEYARSMLGKPYGYHNMIFSWIDTLGDNYPPPLDAHLVISVMSMWTRVQPAYAANMW 375
Query: 400 NEALNKRLGTEKLDLHGIITETGKRGMSFNQLLTIPEQDDWEYSDGKSTTCVAFILSMYK 459
NEALNKRLGTE LDL+GI+ ET +RGMSF++LLTIPEQD+W YSDGKSTTCVAFIL+MYK
Sbjct: 376 NEALNKRLGTEDLDLYGILEETARRGMSFDELLTIPEQDEWVYSDGKSTTCVAFILAMYK 435
Query: 460 KAGVFAPFTESIQVTEFTIRDAYMLKIFEDNQTRLPSWCNSGADRLPFCQILGEYKMELP 519
AG+F P + IQVTEFTIRDAY LK+FE NQTRLPSWCN+ +L FCQILGEY+MELP
Sbjct: 436 AAGIFDPLADHIQVTEFTIRDAYTLKLFESNQTRLPSWCNTEEGKLDFCQILGEYRMELP 495
Query: 520 EYNTIEPYANMNENCPSSPPTYTRPLGC 547
YNTI PY NMN+NCPS PP Y RP C
Sbjct: 496 GYNTIYPYPNMNQNCPSLPPNYERPSKC 523
>AT4G27020.1 | chr4:13568604-13571381 REVERSE LENGTH=524
Length = 523
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/510 (61%), Positives = 384/510 (75%), Gaps = 16/510 (3%)
Query: 40 PFRARDLLPLLPRGLTWPAVGSVHSAVDLLPRFVAHVAPEASSAVAWRATCFADNEAVLT 99
PF RDLLPL PR ++WP V S+++AVDLLP F+ A + AV W+ CF +N+A L
Sbjct: 28 PFHPRDLLPLFPRQVSWPVVNSLNTAVDLLPTFIGS-ASVRNDAVEWKGACFYENKAWLE 86
Query: 100 LTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQSWTCMDLYVFATPYRIGWDYYITAQ 159
L + A SWTCMD+YVF TPYR+ WD+Y ++
Sbjct: 87 LNNKSGSEFGGGTLHIKVD-------------KAHSWTCMDIYVFVTPYRVTWDWYFASR 133
Query: 160 EHTFEIKAWEEPGEMEYVKQHGIAIFLMPSGMLGTLLSLIDVIPLFSNTIWGQDANLAFL 219
EHT E K WE E EYVKQ G++IFLM +GMLGTL +L DV PLF+NT WG+++N+AFL
Sbjct: 134 EHTMEFKEWEGKAEYEYVKQKGVSIFLMEAGMLGTLRALWDVFPLFTNTGWGENSNIAFL 193
Query: 220 QKHMGASFEKRTQPWSANIRKEDVHSGDFLALSKIRGRWGGFQTLEKWVTGAFAGHTAVC 279
+ HMGA+F R +PW NI +++HSGD LA+SKIRGRWGGF+TLEKWV+GA+AGHTAVC
Sbjct: 194 KNHMGANFYPRPKPWVTNITTDEIHSGDLLAISKIRGRWGGFETLEKWVSGAYAGHTAVC 253
Query: 280 LKDENGTLWVAESGYENKKGEEVIAIVPWDEWWGM-ALKDDSNPQVAFLPLHPDVRARFN 338
L+D G LWV ESG EN+KGE+VIAI+PW+EWW KDDSNP +A LPLHPD RA+FN
Sbjct: 254 LRDSEGKLWVGESGNENEKGEDVIAILPWEEWWEFEQTKDDSNPHIALLPLHPDYRAKFN 313
Query: 339 ETAAWEFARSMYGKPYGYHNMIFSWIDTMSDNYPPPLDANLVMAVMSMWTRLQPLYASNM 398
TAAWE+ARSM GKPYGYHN+IFSWIDT+S NYPPPLDA LV +VM++W+++QP YA+NM
Sbjct: 314 VTAAWEYARSMDGKPYGYHNLIFSWIDTISGNYPPPLDAQLVASVMTVWSKIQPDYAANM 373
Query: 399 WNEALNKRLGTEKLDLHGIITETGKRGMSFNQLLTIPEQDDWEYSDGKSTTCVAFILSMY 458
WNEALNKRLGTE LDL ++ E KRG SF++LL +PEQDDW YSDGKST+C+AFIL MY
Sbjct: 374 WNEALNKRLGTEGLDLPDVLVEVEKRGSSFDELLAVPEQDDWIYSDGKSTSCIAFILEMY 433
Query: 459 KKAGVFAPFTESIQVTEFTIRDAYMLKIFEDNQTRLPSWCN-SGADRLPFCQILGEYKME 517
K+AG+F P + SIQVTEFTI+DAYMLK FE N +R P WCN + +LP+CQILG+Y+ME
Sbjct: 434 KEAGLFDPISSSIQVTEFTIKDAYMLKFFESNASRFPKWCNDNDVVKLPYCQILGKYRME 493
Query: 518 LPEYNTIEPYANMNENCPSSPPTYTRPLGC 547
LP YNT+EPY +MNE+CPS PP Y RP C
Sbjct: 494 LPGYNTMEPYPHMNEHCPSLPPKYHRPKNC 523
>AT5G54870.1 | chr5:22289149-22291604 FORWARD LENGTH=532
Length = 531
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/510 (59%), Positives = 376/510 (73%), Gaps = 16/510 (3%)
Query: 40 PFRARDLLPLLPRGLTWPAVGSVHSAVDLLPRFVAHVAPEASSAVAWRATCFADNEAVLT 99
PF RDLLP LPR ++WP + S++ A DLLP F+ A + +V W+ CF +N A L
Sbjct: 36 PFHPRDLLPHLPRQVSWPILNSLYGAADLLPTFIG-TASSGNDSVDWKGACFFENTAWLE 94
Query: 100 LTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQSWTCMDLYVFATPYRIGWDYYITAQ 159
+ A SWTCMDLYVFATPYR+ W +Y ++
Sbjct: 95 FHNKSGSEFGGGTLHIKAD-------------KAHSWTCMDLYVFATPYRVTWTWYFISR 141
Query: 160 EHTFEIKAWEEPGEMEYVKQHGIAIFLMPSGMLGTLLSLIDVIPLFSNTIWGQDANLAFL 219
+HT E W+ E EYVK G++IFLM +GMLGTL +L DV PLFSNT WG+ +NLAFL
Sbjct: 142 QHTVEFPEWDGKAEYEYVKNKGVSIFLMHAGMLGTLQALWDVFPLFSNTGWGESSNLAFL 201
Query: 220 QKHMGASFEKRTQPWSANIRKEDVHSGDFLALSKIRGRWGGFQTLEKWVTGAFAGHTAVC 279
+KHMGA+FE R +PW N+ + + SGD LA+SKIRGRWGGF+TLEKWV+GA+AGH+AV
Sbjct: 202 EKHMGANFEPRPEPWVTNVTTDQIQSGDLLAISKIRGRWGGFETLEKWVSGAYAGHSAVA 261
Query: 280 LKDENGTLWVAESGYENKKGEEVIAIVPWDEWWGM-ALKDDSNPQVAFLPLHPDVRARFN 338
L+D G LWV ESG EN KGE+VIAI+PW+EWW KDDSNPQ+A LPLHPDVRA+F+
Sbjct: 262 LRDSEGKLWVGESGNENDKGEDVIAILPWEEWWAFEQTKDDSNPQIALLPLHPDVRAKFD 321
Query: 339 ETAAWEFARSMYGKPYGYHNMIFSWIDTMSDNYPPPLDANLVMAVMSMWTRLQPLYASNM 398
AAW++ARSM GKPYGYHN+IFSWIDT+S+NYPPPLDA+LV + M++W+++QP YA+NM
Sbjct: 322 VAAAWKYARSMEGKPYGYHNLIFSWIDTVSENYPPPLDAHLVASFMTVWSQMQPEYAANM 381
Query: 399 WNEALNKRLGTEKLDLHGIITETGKRGMSFNQLLTIPEQDDWEYSDGKSTTCVAFILSMY 458
WNEALNKRLGTE LDL ++ E KRG SF++LL +PE DDW YSDGKST+C+AFIL MY
Sbjct: 382 WNEALNKRLGTEGLDLSDVLVEVEKRGSSFDKLLAVPELDDWIYSDGKSTSCIAFILEMY 441
Query: 459 KKAGVFAPFTESIQVTEFTIRDAYMLKIFEDNQTRLPSWCNSGAD-RLPFCQILGEYKME 517
K+AG+F P SIQVTEFTI+DAYML FE+N +RLP+WCN +LP+CQILG+Y+ME
Sbjct: 442 KEAGLFGPLASSIQVTEFTIKDAYMLNFFENNASRLPTWCNDNDSVKLPYCQILGKYRME 501
Query: 518 LPEYNTIEPYANMNENCPSSPPTYTRPLGC 547
LP YNT+EPY++MNE CP+ PP Y RP C
Sbjct: 502 LPGYNTMEPYSHMNEQCPTLPPKYNRPDNC 531
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,386,732
Number of extensions: 473282
Number of successful extensions: 923
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 6
Length of query: 547
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 444
Effective length of database: 8,282,721
Effective search space: 3677528124
Effective search space used: 3677528124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)