BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0404400 Os08g0404400|AK064241
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0404400 Conserved hypothetical protein 348 2e-96
Os04g0321600 Peptidase M24 family protein 111 7e-25
Os08g0404500 C1-like domain containing protein 73 3e-13
>Os08g0404400 Conserved hypothetical protein
Length = 307
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 195/307 (63%), Positives = 195/307 (63%)
Query: 1 HWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPSPPPPSARILRR 60
HWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPSPPPPSARILRR
Sbjct: 1 HWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPSPPPPSARILRR 60
Query: 61 ASLGARAEAGDXXXXXXXXXXXXXXXXXXXXXXXXXCDVCHFDLRTCCALPPATLENDMF 120
ASLGARAEAGD CDVCHFDLRTCCALPPATLENDMF
Sbjct: 61 ASLGARAEAGDHRRRAVLLRRLHAARRRRRRLPVRRCDVCHFDLRTCCALPPATLENDMF 120
Query: 121 EVSXXXXXXXXXXXXXXXGGRICDACGDGVRGFVYHSXXXXXXXXXMLRVXXXXXXXXXX 180
EVS GGRICDACGDGVRGFVYHS MLRV
Sbjct: 121 EVSAFAFLAEPPAAPAAAGGRICDACGDGVRGFVYHSDDPRPRPPPMLRVPAQARRGAGR 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTSRASRTDTAGGARRRCGG 240
CTSRASRTDTAGGARRRCGG
Sbjct: 181 PPLRAPQARAAAPACAARGAAAAATSGRTGPTTTTANPCTCTSRASRTDTAGGARRRCGG 240
Query: 241 EIVLVSSSPAMDGVLQSVPRRRTPRSGGFERFCKXXXXXXXXXXXXXFGSPMAMISAVAG 300
EIVLVSSSPAMDGVLQSVPRRRTPRSGGFERFCK FGSPMAMISAVAG
Sbjct: 241 EIVLVSSSPAMDGVLQSVPRRRTPRSGGFERFCKIVNVVVSVIIAVIFGSPMAMISAVAG 300
Query: 301 PDGLLRG 307
PDGLLRG
Sbjct: 301 PDGLLRG 307
>Os04g0321600 Peptidase M24 family protein
Length = 1056
Score = 111 bits (277), Expect = 7e-25, Method: Composition-based stats.
Identities = 48/48 (100%), Positives = 48/48 (100%)
Query: 1 HWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETP 48
HWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETP
Sbjct: 797 HWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETP 844
>Os08g0404500 C1-like domain containing protein
Length = 269
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 235 RRRCGGEIVLVSSSPAMDGVLQSVPRRRTPRSGGFERFCKXXXXXXXXXXXXXFGSPMAM 294
RRR G + ++ +P M+G LQS+PRR T RSGGFERF K FG+PM +
Sbjct: 198 RRRSGAGQIALAGAPLMEGALQSLPRR-TRRSGGFERFSKIVGVIVSAIIAVIFGNPMGL 256
Query: 295 ISAVAGPDGLLRG 307
I+AVAGPDGLLRG
Sbjct: 257 IAAVAGPDGLLRG 269
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,137,511
Number of extensions: 296243
Number of successful extensions: 1828
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1826
Number of HSP's successfully gapped: 4
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)