Os08g0404400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0404400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.9 | 0.47 | 8.7 | 0.634 | 0.546 | -1.15 | -0.0751 | 0.2 | 0.00721 | 10.5 | 28.78 | 4803 | -- | -- |
| 99.91 | 0.466 | 8.7 | 0.679 | 0.548 | -1.14 | -0.081 | -- | 0.0176 | 10.5 | 28.72 | 4815 | -- | -- |
| 99.92 | 0.466 | 8.7 | 0.635 | 0.548 | -1.16 | -- | 0.183 | 0.00779 | 10.5 | 28.78 | 4815 | -- | -- |
| 99.93 | 0.466 | 8.7 | 0.681 | 0.549 | -1.14 | -- | -- | 0.018 | 10.6 | 28.73 | 4815 | -- | -- |
| 116.86 | 0.503 | 8.72 | 0.555 | -- | -1.13 | -- | 0.4 | -0.0166 | -- | 28.33 | 4637 | -- | -- |
| 145.21 | 0.565 | 8.68 | 1.03 | 0.479 | -- | -0.178 | -- | 0.0943 | 11 | -- | -- | -- | -- |
| 145.34 | 0.565 | 8.68 | 1.02 | 0.479 | -- | -- | -- | 0.0939 | 11 | -- | -- | -- | -- |
| 115.95 | 0.502 | 8.73 | 0.722 | -- | -0.915 | -- | -- | -0.0557 | -- | 28.88 | 5944 | -- | -- |
| 109.44 | 0.487 | 8.73 | -- | 0.534 | -1.31 | -- | -- | -0.109 | 10.4 | 27.7 | 4795 | -- | -- |
| 159.64 | 0.59 | 8.69 | 1.01 | -- | -- | -- | -- | 0.0902 | -- | -- | -- | -- | -- |
| 172.84 | 0.615 | 8.71 | -- | 0.471 | -- | -- | -- | -0.0199 | 10.9 | -- | -- | -- | -- |
| 124.1 | 0.519 | 8.76 | -- | -- | -1.22 | -- | -- | -0.217 | -- | 27.8 | 5943 | -- | -- |
| 186.59 | 0.638 | 8.72 | -- | -- | -- | -- | -- | -0.0219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.97 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 2 | 103.21 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 16 | 103.54 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 17 | 103.62 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 18 | 103.66 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 22 | 103.83 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 24 | 103.94 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 27 | 104.00 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 11 |
| 28 | 104.01 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 48 | 104.27 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 53 | 104.34 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 6 | NA |
| 83 | 104.54 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 116 | 104.75 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 20 |
| 124 | 104.80 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 17 |
| 180 | 105.02 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 221 | 105.22 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 21 |
| 233 | 105.26 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 22 |
| 272 | 105.35 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 14 |
| 278 | 105.35 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 283 | 105.36 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 293 | 105.37 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 306 | 105.38 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 384 | 105.52 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 443 | 105.69 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 457 | 105.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 491 | 105.84 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 501 | 105.86 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 503 | 105.86 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 506 | 105.86 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 554 | 105.98 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 616 | 106.08 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 646 | 106.12 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 661 | 106.15 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 664 | 106.15 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 683 | 106.19 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 715 | 106.22 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 721 | 106.23 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 746 | 106.24 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 753 | 106.24 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 9 | 14 |
| 813 | 106.33 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 880 | 106.40 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 18 |
| 935 | 106.43 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 9 | 14 |
| 939 | 106.43 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 989 | 106.47 | temperature | 30.0 | 4320 | < th | dose independent | sin | 21 | NA |