BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0404400 Os08g0404400|AK064241
         (307 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10710.1  | chr4:6602226-6605450 REVERSE LENGTH=1075            89   4e-18
AT4G10670.1  | chr4:6584727-6585758 FORWARD LENGTH=344             78   7e-15

>AT4G10710.1 | chr4:6602226-6605450 REVERSE LENGTH=1075
          Length = 1074

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 40/47 (85%)

Query: 2   WSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETP 48
           W  PQF  LDLEFD PLRELGFHGVP+K SAFIIPTS+CLVELIE P
Sbjct: 812 WQLPQFASLDLEFDQPLRELGFHGVPHKTSAFIIPTSSCLVELIEYP 858



>AT4G10670.1 | chr4:6584727-6585758 FORWARD LENGTH=344
          Length = 343

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 37/47 (78%)

Query: 2   WSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETP 48
           W  PQF  L LEFD PLRE GF+GVP+K S FIIPTS+CLVEL E+P
Sbjct: 251 WQLPQFASLSLEFDQPLREFGFNGVPHKTSTFIIPTSSCLVELTESP 297



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,487,874
Number of extensions: 140696
Number of successful extensions: 573
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 209
Effective length of database: 8,419,801
Effective search space: 1759738409
Effective search space used: 1759738409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)