BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0400300 Os08g0400300|AK067617
         (481 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0400300  Conserved hypothetical protein                      887   0.0  
Os09g0363500  Conserved hypothetical protein                      400   e-112

>Os08g0400300 Conserved hypothetical protein
          Length = 481

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/437 (97%), Positives = 425/437 (97%)

Query: 17  CIVQEDRKRAPKLACCPPSSEQQHVKSNGNCRNSEDRPVPNFMPLSWNPMNSSLPPDIRW 76
           CIVQEDRKRAPKLACCPPSSEQQHVKSNGNCRNSEDRPVPNFMPLSWNPMNSSLPPDIRW
Sbjct: 17  CIVQEDRKRAPKLACCPPSSEQQHVKSNGNCRNSEDRPVPNFMPLSWNPMNSSLPPDIRW 76

Query: 77  WLQLQPNLGGQKNLAGEHLYFLGREISDKEVEDSAQKNIHDEPLFCEMFDTNPEKIEDVF 136
           WLQLQPNLGGQKNLAGEHLYFLGREISDKEVEDSAQKNIHDEPLFCEMFDTNPEKIEDVF
Sbjct: 77  WLQLQPNLGGQKNLAGEHLYFLGREISDKEVEDSAQKNIHDEPLFCEMFDTNPEKIEDVF 136

Query: 137 EPSWMVSTASMKYSSETGLQDLKNIGGYSQVPSKCKENASDCLFNDKEFLDXXXXXXXXX 196
           EPSWMVSTASMKYSSETGLQDLKNIGGYSQVPSKCKENASDCLFNDKEFLD         
Sbjct: 137 EPSWMVSTASMKYSSETGLQDLKNIGGYSQVPSKCKENASDCLFNDKEFLDFKNFNPPPS 196

Query: 197 XXXQKDDFDMNAPWKGGERSQPWWQITDENELALLVAERAMQHIENCDLPRPTQIVRVQG 256
              QKDDFDMNAPWKGGERSQPWWQITDENELALLVAERAMQHIENCDLPRPTQIVRVQG
Sbjct: 197 KNPQKDDFDMNAPWKGGERSQPWWQITDENELALLVAERAMQHIENCDLPRPTQIVRVQG 256

Query: 257 TESRSHENMGRYRGSSGPAGTMSYPDTGQCEHIECSYSTASTDEVDLTSDGVWQQQERNV 316
           TESRSHENMGRYRGSSGPAGTMSYPDTGQCEHIECSYSTASTDEVDLTSDGVWQQQERNV
Sbjct: 257 TESRSHENMGRYRGSSGPAGTMSYPDTGQCEHIECSYSTASTDEVDLTSDGVWQQQERNV 316

Query: 317 ARSDAQDFSRGINTEPRGKRTYQNPAEQAQLLEALCHSQTRAREAEMAGKKAQSEKDDVI 376
           ARSDAQDFSRGINTEPRGKRTYQNPAEQAQLLEALCHSQTRAREAEMAGKKAQSEKDDVI
Sbjct: 317 ARSDAQDFSRGINTEPRGKRTYQNPAEQAQLLEALCHSQTRAREAEMAGKKAQSEKDDVI 376

Query: 377 KLFFRQASHLFACKQWLKMLQLENICLQLKHREHQIATMIPDIPWITLKKRTTPDHEKED 436
           KLFFRQASHLFACKQWLKMLQLENICLQLKHREHQIATMIPDIPWITLKKRTTPDHEKED
Sbjct: 377 KLFFRQASHLFACKQWLKMLQLENICLQLKHREHQIATMIPDIPWITLKKRTTPDHEKED 436

Query: 437 WTRKKGRRHKNAGSFCD 453
           WTRKKGRRHKNAGSFCD
Sbjct: 437 WTRKKGRRHKNAGSFCD 453



>Os09g0363500 Conserved hypothetical protein
          Length = 463

 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/428 (50%), Positives = 278/428 (64%), Gaps = 18/428 (4%)

Query: 17  CIVQEDRKRAPKLACCPPSSEQQHVKSNGNCRNSEDRPVPNFMPLSWNPMNSSLPPDIRW 76
           C VQED KRAPKL CCPPS  QQH  +NGN  N +D  +PNFMPL+WN MNS+LP D +W
Sbjct: 17  CRVQEDAKRAPKLGCCPPSG-QQHETNNGNQTNPQDCHIPNFMPLNWNAMNSNLPKDTQW 75

Query: 77  WLQLQPNLGGQKNLAGEHLYFLGREISDKEVEDSAQKNIHDEPLFCEMFDTNPEKIEDVF 136
           WLQLQPN G Q  LA E L ++  E+  K+VE  A           ++ D NP+K  D F
Sbjct: 76  WLQLQPNFGCQNVLASEDLNYMCGEVDVKKVESFAP--------VSKLEDINPKKTADPF 127

Query: 137 EPSWMVSTASMKYSSETGLQDLKNIGGYSQVPSKCKENASDCLFNDKEFLDXXXXXXXXX 196
           EP W+VSTA MK + ETG ++LK++  YS++  KC+ +A+  L  DKE +D         
Sbjct: 128 EPPWIVSTAFMKQTYETGFEELKSLPAYSEMTLKCRGSAT-YLHEDKEHMDFKTFDPLYP 186

Query: 197 XXXQKDDFDMNAPWKGGERSQPWWQITDENELALLVAERAMQHIENCDLPRPTQIVRVQG 256
              Q   ++M+APW+   +S+PWWQ+ + + LA +VAE  M ++   +LPRPTQ  R  G
Sbjct: 187 KKPQTACYEMDAPWQENRKSRPWWQVAEADGLASVVAESEMHNVGKNELPRPTQ--RAHG 244

Query: 257 TESRSHENMGRYRGSSGPAGTMSYPDTGQCEHIECSYSTASTDEVDLTSDGVWQQQERNV 316
           ++  +HEN   Y    GP      P   Q + + CSYS +ST+E + +  G WQ Q RN 
Sbjct: 245 SKLNNHENKDDY----GPYTGKESPPV-QYDTMLCSYSISSTNETNSSDGGGWQHQ-RND 298

Query: 317 ARSDAQDFSRGINTEPRGKRTYQNPAEQAQLLEALCHSQTRAREAEMAGKKAQSEKDDVI 376
           AR   QD     +  P  K TY++ AE+ QLL+AL HSQTRAREAEMA KKA  EKD VI
Sbjct: 299 ARGGTQDSCSSDDRTPGSKPTYRSAAERTQLLDALRHSQTRAREAEMAAKKAYDEKDHVI 358

Query: 377 KLFFRQASHLFACKQWLKMLQLENICLQLKHREHQIATMIPDIPWITLKKRTTPDHEKED 436
           KL FRQASHLFACKQWLKMLQLENICLQL+ +EHQIA M P++PWI LK++ TP  E++D
Sbjct: 359 KLLFRQASHLFACKQWLKMLQLENICLQLRLKEHQIAAMFPELPWIMLKEKVTPGQERKD 418

Query: 437 WTRKKGRR 444
            TRKKGR+
Sbjct: 419 GTRKKGRK 426



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,041,472
Number of extensions: 690200
Number of successful extensions: 1678
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1672
Number of HSP's successfully gapped: 2
Length of query: 481
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 376
Effective length of database: 11,553,331
Effective search space: 4344052456
Effective search space used: 4344052456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)