Os08g0400300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0400300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.7 | 0.348 | 11.1 | 1.04 | 1.72 | -0.44 | -0.637 | -2.08 | 0.387 | 17.4 | 0.1129 | 3179 | -- | -- |
| 57.53 | 0.353 | 11.1 | 1.16 | 1.71 | -0.792 | -1.1 | -- | 0.406 | 17.1 | 0.4049 | 2591 | -- | -- |
| 55.67 | 0.348 | 11.1 | 1.04 | 1.72 | -0.4 | -- | -2.14 | 0.392 | 17.4 | 0.2089 | 3155 | -- | -- |
| 57.14 | 0.352 | 11.1 | 1.07 | 1.68 | -0.908 | -- | -- | 0.379 | 17.2 | 0.3503 | 2570 | -- | -- |
| 209.42 | 0.674 | 11.1 | 0.996 | -- | -0.367 | -- | -2.28 | 0.362 | -- | 0.2797 | 2635 | -- | -- |
| 70.27 | 0.393 | 11.1 | 0.83 | 1.74 | -- | -0.483 | -- | 0.442 | 17.3 | -- | -- | -- | -- |
| 70.84 | 0.394 | 11.1 | 0.831 | 1.73 | -- | -- | -- | 0.439 | 17.4 | -- | -- | -- | -- |
| 210.52 | 0.676 | 11 | 1.12 | -- | -0.985 | -- | -- | 0.343 | -- | 0.3097 | 2459 | -- | -- |
| 84.48 | 0.428 | 11.1 | -- | 1.71 | -0.482 | -- | -- | 0.308 | 17.4 | 0.5004 | 2357 | -- | -- |
| 227.75 | 0.705 | 11 | 0.772 | -- | -- | -- | -- | 0.396 | -- | -- | -- | -- | -- |
| 89.04 | 0.441 | 11.1 | -- | 1.72 | -- | -- | -- | 0.347 | 17.4 | -- | -- | -- | -- |
| 237.07 | 0.717 | 11.1 | -- | -- | -0.549 | -- | -- | 0.265 | -- | 0.5 | 2481 | -- | -- |
| 243.47 | 0.728 | 11.1 | -- | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.99 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 52.14 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 48 | 53.00 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 69 | 53.04 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 74 | 53.15 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 78 | 53.20 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 105 | 53.21 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 108 | 53.22 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 123 | 53.27 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 163 | 53.48 | radiation | 40 | 43200 | < th | dose independent | sin | 9 | NA |
| 200 | 53.51 | radiation | 20 | 43200 | < th | dose independent | sin | 10 | NA |
| 209 | 53.51 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 217 | 53.53 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 262 | 53.58 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 405 | 53.80 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 422 | 53.80 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 431 | 53.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 474 | 53.89 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 496 | 53.91 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 12 |
| 501 | 53.93 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 503 | 53.93 | wind | 7 | 43200 | > th | dose dependent | sin | 22 | NA |
| 511 | 53.95 | radiation | 30 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 515 | 53.96 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 541 | 53.99 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 562 | 54.00 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 15 |
| 563 | 54.01 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 676 | 54.01 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 760 | 54.05 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 820 | 54.07 | radiation | 30 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 843 | 54.08 | radiation | 30 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 973 | 54.14 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |