BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0347500 Os08g0347500|009-094-G08
         (163 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0347500  Photosystem II oxygen evolving complex protein...   340   2e-94
Os10g0461100  Similar to Keratin, type II cytoskeletal 1 (Cy...   270   3e-73
Os03g0279950  Photosystem II oxygen evolving complex protein...   121   2e-28

>Os08g0347500 Photosystem II oxygen evolving complex protein PsbP family protein
          Length = 163

 Score =  340 bits (873), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MAGNKPSLLKGHMMQGCITIRSFHCEFVIIQEVVVQGQDKVYKDVIEPLESVSVNTIPTS 60
           MAGNKPSLLKGHMMQGCITIRSFHCEFVIIQEVVVQGQDKVYKDVIEPLESVSVNTIPTS
Sbjct: 1   MAGNKPSLLKGHMMQGCITIRSFHCEFVIIQEVVVQGQDKVYKDVIEPLESVSVNTIPTS 60

Query: 61  KQDIRELGPPDQVAEALIRKVLAAPTQKTKLIEAKENDVDGRTYYTFEFTAQAPNFTRHA 120
           KQDIRELGPPDQVAEALIRKVLAAPTQKTKLIEAKENDVDGRTYYTFEFTAQAPNFTRHA
Sbjct: 61  KQDIRELGPPDQVAEALIRKVLAAPTQKTKLIEAKENDVDGRTYYTFEFTAQAPNFTRHA 120

Query: 121 LGAIAIANGKFYTLTTGANERRWEKIKDRLHTVVDSFKIEARV 163
           LGAIAIANGKFYTLTTGANERRWEKIKDRLHTVVDSFKIEARV
Sbjct: 121 LGAIAIANGKFYTLTTGANERRWEKIKDRLHTVVDSFKIEARV 163



>Os10g0461100 Similar to Keratin, type II cytoskeletal 1 (Cytokeratin 1) (K1) (CK
           1) (67 kDa cytokeratin) (Hair alpha protein)
          Length = 537

 Score =  270 bits (690), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 31  QEVVVQGQDKVYKDVIEPLESVSVNTIPTSKQDIRELGPPDQVAEALIRKVLAAPTQKTK 90
           QEVVVQGQDKVYKDVIEPLESVSVNTIPTSKQDIRELGPPDQVAEALIRKVLAAPTQKTK
Sbjct: 391 QEVVVQGQDKVYKDVIEPLESVSVNTIPTSKQDIRELGPPDQVAEALIRKVLAAPTQKTK 450

Query: 91  LIEAKENDVDGRTYYTFEFTAQAPNFTRHALGAIAIANGKFYTLTTGANERRWEKIKDRL 150
           LIEAKENDVDGRTYYTFEFTAQAPNFTRHALGAIAIANGKFYTLTTGANERRWEKIKDRL
Sbjct: 451 LIEAKENDVDGRTYYTFEFTAQAPNFTRHALGAIAIANGKFYTLTTGANERRWEKIKDRL 510

Query: 151 HTVVDSFKIE 160
           HTVVDSFKIE
Sbjct: 511 HTVVDSFKIE 520



>Os03g0279950 Photosystem II oxygen evolving complex protein PsbP family protein
          Length = 232

 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 77/124 (62%)

Query: 37  GQDKVYKDVIEPLESVSVNTIPTSKQDIRELGPPDQVAEALIRKVLAAPTQKTKLIEAKE 96
           G D  +KD    L+ V V  IPT+K DIR+LGP D+    L+  V AAP Q   + + +E
Sbjct: 105 GHDSAFKDRNVALQCVRVGFIPTTKTDIRDLGPMDEAIFNLVNNVYAAPNQIPTVYDMQE 164

Query: 97  NDVDGRTYYTFEFTAQAPNFTRHALGAIAIANGKFYTLTTGANERRWEKIKDRLHTVVDS 156
             VDG+ Y+TFE+  +AP +   A   +AI NG++YTL   ANERRW ++++RL  V DS
Sbjct: 165 RTVDGKNYWTFEYDLEAPGYGVSAFATVAIGNGRYYTLIVTANERRWSRLRNRLKVVADS 224

Query: 157 FKIE 160
           FK+ 
Sbjct: 225 FKLS 228



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,237,773
Number of extensions: 189926
Number of successful extensions: 487
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 70
Effective length of database: 12,179,899
Effective search space: 852592930
Effective search space used: 852592930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)