Os08g0347500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem II oxygen evolving complex protein PsbP family protein.
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Os08g0347500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosystem II oxygen evolving complex protein PsbP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.19 | 0.275 | 13 | -1.28 | 1.08 | -1.02 | 0.0669 | -1.3 | -0.606 | 22.1 | 27.99 | 133 | -- | -- |
| 36.35 | 0.281 | 13 | -1.47 | 1.06 | -0.945 | -0.164 | -- | -0.652 | 22 | 28.8 | 165 | -- | -- |
| 34.08 | 0.272 | 13 | -1.26 | 1.06 | -1.02 | -- | -1.34 | -0.606 | 22.1 | 27.7 | 156 | -- | -- |
| 36.34 | 0.281 | 13 | -1.5 | 1.06 | -0.98 | -- | -- | -0.657 | 22.1 | 28.48 | 159 | -- | -- |
| 75.38 | 0.404 | 13 | -1.45 | -- | -1.51 | -- | -0.864 | -0.643 | -- | 36.45 | 681 | -- | -- |
| 49.48 | 0.33 | 13 | -1.26 | 1.05 | -- | -0.165 | -- | -0.452 | 21 | -- | -- | -- | -- |
| 49.58 | 0.33 | 13 | -1.25 | 1.05 | -- | -- | -- | -0.452 | 21 | -- | -- | -- | -- |
| 75.73 | 0.405 | 13 | -1.63 | -- | -1.54 | -- | -- | -0.691 | -- | 44.74 | 687 | -- | -- |
| 89.31 | 0.443 | 13 | -- | 1.08 | -0.397 | -- | -- | -0.359 | 21.3 | 54.75 | 16 | -- | -- |
| 112.92 | 0.497 | 12.9 | -1.25 | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
| 90.99 | 0.446 | 12.9 | -- | 1.05 | -- | -- | -- | -0.312 | 20.9 | -- | -- | -- | -- |
| 139.3 | 0.55 | 12.9 | -- | -- | -0.939 | -- | -- | -0.434 | -- | 55.07 | 633 | -- | -- |
| 154.28 | 0.58 | 12.9 | -- | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.40 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 5 | 29.86 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 43 | 32.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 66 | 33.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 93 | 34.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 99 | 34.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 102 | 34.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 110 | 34.28 | temperature | 20 | 90 | > th | dose dependent | sin | 6 | NA |
| 112 | 34.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 126 | 34.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 137 | 34.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 160 | 34.72 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 19 |
| 164 | 34.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 168 | 34.78 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 205 | 35.05 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 225 | 35.23 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 228 | 35.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 231 | 35.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 244 | 35.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 278 | 35.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 330 | 35.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 350 | 35.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 359 | 35.90 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 426 | 36.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 458 | 36.25 | temperature | 25 | 90 | < th | dose dependent | sin | 23 | NA |
| 508 | 36.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 526 | 36.45 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 551 | 36.49 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 582 | 36.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 647 | 36.75 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 23 |
| 664 | 36.80 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 23 |
| 667 | 36.81 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 762 | 37.03 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 23 |
| 764 | 37.03 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 789 | 37.11 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 841 | 37.23 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 851 | 37.26 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 886 | 37.35 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 900 | 37.38 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 23 |
| 991 | 37.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 2 |