BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0347500 Os08g0347500|009-094-G08
(163 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55330.1 | chr3:20514031-20515275 REVERSE LENGTH=231 218 1e-57
AT2G39470.1 | chr2:16476335-16477653 FORWARD LENGTH=239 111 2e-25
AT3G05410.2 | chr3:1554783-1561456 FORWARD LENGTH=281 60 4e-10
>AT3G55330.1 | chr3:20514031-20515275 REVERSE LENGTH=231
Length = 230
Score = 218 bits (555), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 113/129 (87%)
Query: 31 QEVVVQGQDKVYKDVIEPLESVSVNTIPTSKQDIRELGPPDQVAEALIRKVLAAPTQKTK 90
QEVV++GQDKVYKDVIEPLESVSVN +PTSKQ I+E GPP Q+AE LI+KVLA P QKT
Sbjct: 100 QEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTT 159
Query: 91 LIEAKENDVDGRTYYTFEFTAQAPNFTRHALGAIAIANGKFYTLTTGANERRWEKIKDRL 150
LI+A E+DVDG+TYY FEFT QA N+TRHALG I + NG FYTLTTGANERRWEK+KDRL
Sbjct: 160 LIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRL 219
Query: 151 HTVVDSFKI 159
HTVVDSFKI
Sbjct: 220 HTVVDSFKI 228
>AT2G39470.1 | chr2:16476335-16477653 FORWARD LENGTH=239
Length = 238
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 75/129 (58%)
Query: 31 QEVVVQGQDKVYKDVIEPLESVSVNTIPTSKQDIRELGPPDQVAEALIRKVLAAPTQKTK 90
+E + D +KD L++V V IPT K DI E+GP ++V L++ AAP Q
Sbjct: 107 REFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVAT 166
Query: 91 LIEAKENDVDGRTYYTFEFTAQAPNFTRHALGAIAIANGKFYTLTTGANERRWEKIKDRL 150
+ + KE DG+ YYTFE+ + P + + +A+ N ++YTL GANERRW K+K +L
Sbjct: 167 IYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQL 226
Query: 151 HTVVDSFKI 159
V DS KI
Sbjct: 227 QVVADSLKI 235
>AT3G05410.2 | chr3:1554783-1561456 FORWARD LENGTH=281
Length = 280
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 51 SVSVNTIPTSKQ-DIRELGPPDQVAEALIRKVLAAPTQ---KTKLIEA--KENDVDGRTY 104
+VSV P S I G P +V EA++R V + + K L+E+ +++ Y
Sbjct: 164 NVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGSGQRADLKGTLLESSIRQDSERNLKY 223
Query: 105 YTFEFTAQAPNFTRHALGAIAIANGKFYTLTTGANERRWEKIKDRLHTVVDSFKI 159
Y EF ++P F RH + +G+ YTL A E W ++K ++T SF I
Sbjct: 224 YELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSFNI 278
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,396,411
Number of extensions: 124510
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)