BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0343300 Os08g0343300|AK067775
(462 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0343300 Transcription factor TFIIE, alpha subunit fami... 822 0.0
Os11g0137400 401 e-112
Os12g0134300 234 1e-61
Os11g0137500 Transcription factor TFIIE, alpha subunit fami... 161 9e-40
>Os08g0343300 Transcription factor TFIIE, alpha subunit family protein
Length = 462
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/448 (89%), Positives = 400/448 (89%)
Query: 1 MGSMEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLA 60
MGSMEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLA
Sbjct: 1 MGSMEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLA 60
Query: 61 KALKLHSKQLRRILRFFEEEKLVTRDHRKEXXXXXXXXXXXXXXXXDGQSITKEGEEKVK 120
KALKLHSKQLRRILRFFEEEKLVTRDHRKE DGQSITKEGEEKVK
Sbjct: 61 KALKLHSKQLRRILRFFEEEKLVTRDHRKESAKGAKIYSAAAAAAGDGQSITKEGEEKVK 120
Query: 121 MHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKRYSAFDALQLI 180
MHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKRYSAFDALQLI
Sbjct: 121 MHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKRYSAFDALQLI 180
Query: 181 SYTDEYFHCENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLKPLQAQ 240
SYTDEYFHCENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLKPLQAQ
Sbjct: 181 SYTDEYFHCENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLKPLQAQ 240
Query: 241 LNRVKDLPAPEFGSLQSWERANIGAFGTADPSAADSSRNPQGQYGTPMPYLGETKVEVAL 300
LNRVKDLPAPEFGSLQSWERANIGAFGTADPSAADSSRNPQGQYGTPMPYLGETKVEVAL
Sbjct: 241 LNRVKDLPAPEFGSLQSWERANIGAFGTADPSAADSSRNPQGQYGTPMPYLGETKVEVAL 300
Query: 301 SGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNLXXXXXXXXXXXXX 360
SGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNL
Sbjct: 301 SGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNLDEKSEVKDEKKQD 360
Query: 361 XXXXXXXIQDEYIKAYYEALRKRQDEEEAKRKIQQEGDTFASASHSERQVGMKSKRXXXX 420
IQDEYIKAYYEALRKRQDEEEAKRKIQQEGDTFASASHSERQVGMKSKR
Sbjct: 361 SKEDEKSIQDEYIKAYYEALRKRQDEEEAKRKIQQEGDTFASASHSERQVGMKSKREDDD 420
Query: 421 XXXXXXXXQPAGNTAETYKLADLNVEAQ 448
QPAGNTAETYKLADLNVEAQ
Sbjct: 421 EGVEWEEEQPAGNTAETYKLADLNVEAQ 448
>Os11g0137400
Length = 443
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 232/461 (50%), Positives = 280/461 (60%), Gaps = 64/461 (13%)
Query: 1 MGSMEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDAL-TRRQWVREEDL 59
M SMEP NR+VR+ ARAFYDD+S+ D PK++RGDN G+AVVVL+AL RRQWVREEDL
Sbjct: 1 MASMEPLNRMVRMVARAFYDDVSLARD--PKSARGDNCGLAVVVLEALGRRRQWVREEDL 58
Query: 60 AKALKLHSKQLRRILRFFEEEKLVTRDHRKEXXXXXXXXXXXXXXXXDGQSITKEGEEKV 119
AKALK+ SKQLRRIL+FFEEEKLV R HRKE
Sbjct: 59 AKALKISSKQLRRILQFFEEEKLVRRCHRKE----------------------------- 89
Query: 120 KMHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKRYSAFDALQL 179
+ DVVRYRIHRM+KKLKD LD R+T+QHY+CPNCK+RYSAFDALQL
Sbjct: 90 --------------VYDVVRYRIHRMRKKLKDGLDDRDTVQHYVCPNCKRRYSAFDALQL 135
Query: 180 ISYTDEYFHCENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLKPLQA 239
+S D+YFHCE+C GEL ES+KL +E+ G NA K +KLKDMQQR++EQLKPL A
Sbjct: 136 VSDMDDYFHCEHCKGELRPESEKLTLDEIVCGGGNAIKHTHDKLKDMQQRMEEQLKPLIA 195
Query: 240 QLNRVKDLPAPEFGSLQSWERANIGAFGTADPSAADSSRNPQGQYGT-PMPYLGETKVEV 298
L+RVKDLP P F SLQ WERA IGA A SS+N +G+Y + PMP+LGET+VEV
Sbjct: 196 VLDRVKDLPFPSFMSLQDWERATIGASANG---AVGSSQNSEGRYSSKPMPFLGETEVEV 252
Query: 299 ALSGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNL-XXXXXXXXXX 357
G+ EG ESG +K WM ++ L E + E +N++NL
Sbjct: 253 NFLGSTGAQEGVESGM--ESIKPQHSWMNRKRTVLAGEHKEENNNTANLDQSSEAKSDKK 310
Query: 358 XXXXXXXXXXIQDEYIKAYYEALRKRQDEEEAKRKIQQEG------DTFASASHSERQVG 411
IQ+ Y KAYYEA++KRQ E+E KR IQ+E FAS + ER++G
Sbjct: 311 QLSEEDEMKSIQEAYAKAYYEAIQKRQ-EDEGKRAIQEESLACISDQPFASDAQFERRLG 369
Query: 412 MKSKRXXXXXXXXX----XXXQPAGNTAETYKLADLNVEAQ 448
KSKR Q GN E YK ADLNVE Q
Sbjct: 370 AKSKRDDGGESGDDGIELKVRQSTGNIEEVYKFADLNVETQ 410
>Os12g0134300
Length = 373
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 177/292 (60%), Gaps = 18/292 (6%)
Query: 169 KRYSAFDALQLISYTDEYFHCENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQ 228
++YSAFDALQL+S D+YFHCE+C +L+ ES+KL +E+ G DNA K + +KLKDMQQ
Sbjct: 72 RKYSAFDALQLVSDMDDYFHCEHCKEQLLPESEKLTLDEVVCGGDNAIKHKHDKLKDMQQ 131
Query: 229 RIDEQLKPLQAQLNRVKDLPAPEFGSLQSWERANIGAFGTADPSAADSSRNPQGQYGT-P 287
R++EQLKPL A L+RVKDLP P F SLQ WERA + A A SS+N +G+Y + P
Sbjct: 132 RMEEQLKPLIAVLDRVKDLPFPSFMSLQDWERATMEASANG---AVGSSQNSEGRYSSKP 188
Query: 288 MPYLGETKVEVALSGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNL 347
MP+LGET+VEV G+ EG ESG +K P WM ++ LT E +GE SN+++L
Sbjct: 189 MPFLGETEVEVNFLGSTGAQEGVESGM--ESIKPQPSWMNRKSTVLTGEHKGEISNTADL 246
Query: 348 -XXXXXXXXXXXXXXXXXXXXIQDEYIKAYYEALRKRQDEEEAKRKIQQEGDT------F 400
IQ+ Y KAYYEA++KRQ E+E KR IQ+E T F
Sbjct: 247 DQSSEAKSDKKQLSEKDEMKSIQEAYAKAYYEAIQKRQ-EDEDKRMIQEESLTCISDQPF 305
Query: 401 ASASHSERQVGMKSKRXXXXXXX----XXXXXQPAGNTAETYKLADLNVEAQ 448
AS + ER++G KSKR QP GN E YKLADL+VE Q
Sbjct: 306 ASDAQFERRLGAKSKRDDGGDSGDDGIEMKVEQPTGNIGEVYKLADLDVETQ 357
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 42/50 (84%), Gaps = 2/50 (4%)
Query: 1 MGSMEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTR 50
M SMEP NR+VR+ ARAFYD++S+ D PK++RGDN G+AVVVLDALTR
Sbjct: 1 MASMEPLNRMVRMVARAFYDNVSLARD--PKSARGDNCGLAVVVLDALTR 48
>Os11g0137500 Transcription factor TFIIE, alpha subunit family protein
Length = 170
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Query: 1 MGSMEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLA 60
M +ME NRLVR+ AR FY+D+S++ D Q K + + G+ VVVLDALTR+QWVREEDLA
Sbjct: 1 MDTMEQLNRLVRMVARGFYEDVSLEED-QSKPNGSGSCGIVVVVLDALTRQQWVREEDLA 59
Query: 61 KALKLHSKQLRRILRFFEEEKLVTRDHRKEXXX-XXXXXXXXXXXXXDGQSITKEGEEKV 119
++L + +LR+I F E++KLV R +RKE D + K+
Sbjct: 60 RSLMIPFNRLRQITHFLEQQKLVRRYYRKEAIHDASISTASPSHVSHDAHLVPTNVAGKL 119
Query: 120 KMHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKR 170
KM YCCL Y Q+ DV YRIH MKKKLKDELD IQ+Y+CPNC++R
Sbjct: 120 KMIMQPYCCLHYGQVYDVTLYRIHEMKKKLKDELDGNYMIQNYVCPNCERR 170
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,688,314
Number of extensions: 563978
Number of successful extensions: 1776
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1758
Number of HSP's successfully gapped: 6
Length of query: 462
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 358
Effective length of database: 11,605,545
Effective search space: 4154785110
Effective search space used: 4154785110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)