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Os08g0343300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor TFIIE, alpha subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0122) R2 : 0.639
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.745 (0.0292) R2dC : 0.515 R2C : 0.49
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.31 (0.0257) R2dN8 : 0.149 R2N8 : 0.124
σ : 0.23
deviance : 24.18
__
_____
C
peak time of C : 1.07
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.44 0.202 12.1 0.27 0.484 0.387 0.708 -0.643 0.372 0.198 64.79 9 -- --
19.28 0.206 12.1 0.231 0.48 0.385 0.325 -- 0.361 0.2 62.99 22 -- --
19.63 0.206 12.1 0.225 0.476 0.389 -- -0.121 0.367 0.182 65 14 -- --
19.68 0.207 12.1 0.22 0.477 0.384 -- -- 0.366 0.187 64.99 14 -- --
27.19 0.244 12.1 0.226 -- 0.725 -- -0.149 0.392 -- 65 14 -- --
22.32 0.221 12.1 0.234 0.741 -- 0.375 -- 0.337 1.02 -- -- -- --
22.91 0.224 12.1 0.22 0.741 -- -- -- 0.335 1.06 -- -- -- --
27.27 0.244 12.1 0.221 -- 0.721 -- -- 0.391 -- 64.99 14 -- --
20.96 0.213 12.1 -- 0.48 0.387 -- -- 0.341 0.211 64.77 14 -- --
57.02 0.353 12.1 0.248 -- -- -- -- 0.349 -- -- -- -- --
24.18 0.23 12.1 -- 0.745 -- -- -- 0.31 1.07 -- -- -- --
28.56 0.25 12.1 -- -- 0.724 -- -- 0.367 -- 64.99 14 -- --
58.64 0.357 12.1 -- -- -- -- -- 0.322 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.74 humidity 80.0 1440 < th dose independent rect. 8 6
2 17.78 humidity 80.0 1440 > th dose independent rect. 8 6
8 18.03 humidity 60.0 1440 > th dose dependent rect. 11 1
14 18.13 humidity 70.0 1440 > th dose dependent rect. 8 6
17 18.18 humidity 70.0 1440 > th dose dependent rect. 9 4
26 18.27 radiation 1.0 43200 < th dose dependent rect. 24 3
34 18.33 humidity 90.0 1440 < th dose dependent rect. 11 1
42 18.39 radiation 1.0 1440 < th dose dependent rect. 7 7
46 18.42 humidity 70.0 10 > th dose dependent sin 23 NA
56 18.47 radiation 1.0 1440 > th dose independent rect. 7 7
62 18.48 radiation 1.0 1440 < th dose independent rect. 7 7
64 18.48 radiation 1.0 43200 < th dose dependent rect. 20 7
67 18.49 radiation 1.0 43200 < th dose dependent rect. 22 5
69 18.49 humidity 60.0 10 > th dose dependent rect. 11 23
81 18.52 humidity 90.0 1440 < th dose dependent rect. 9 5
82 18.52 humidity 60.0 10 > th dose dependent rect. 15 23
85 18.53 humidity 60.0 10 > th dose dependent rect. 17 23
98 18.57 humidity 60.0 10 > th dose dependent no NA NA
106 18.60 humidity 60.0 30 > th dose dependent rect. 13 23
136 18.67 wind 7.0 43200 > th dose independent rect. 17 4
144 18.69 radiation 1.0 1440 > th dose independent rect. 9 3
149 18.69 radiation 10.0 1440 < th dose dependent rect. 8 10
150 18.70 wind 7.0 43200 < th dose independent rect. 17 4
158 18.71 radiation 10.0 1440 < th dose dependent rect. 8 12
163 18.71 humidity 70.0 10 > th dose dependent rect. 1 23
183 18.73 wind 5.0 43200 > th dose dependent rect. 17 5
195 18.75 humidity 60.0 10 > th dose dependent rect. 9 23
207 18.78 radiation 1.0 1440 < th dose independent rect. 9 3
209 18.78 radiation 1.0 1440 < th dose dependent rect. 9 3
212 18.79 wind 1.0 14400 < th dose independent rect. 5 1
233 18.81 radiation 10.0 1440 > th dose independent rect. 15 22
235 18.81 radiation 10.0 1440 < th dose dependent sin 20 NA
255 18.83 humidity 50.0 14400 < th dose independent rect. 15 20
260 18.83 humidity 70.0 10 > th dose dependent rect. 21 23
270 18.85 precipitation 0.1 4320 > th dose dependent rect. 13 8
274 18.86 precipitation 0.1 4320 > th dose dependent sin 20 NA
279 18.86 humidity 70.0 10 > th dose dependent rect. 7 13
294 18.87 precipitation 0.1 4320 > th dose dependent rect. 13 14
302 18.88 humidity 50.0 14400 > th dose independent rect. 15 19
326 18.90 humidity 50.0 14400 < th dose independent sin 11 NA
327 18.90 precipitation 0.1 4320 > th dose independent rect. 13 5
328 18.90 precipitation 0.1 4320 < th dose independent rect. 13 5
331 18.90 wind 5.0 43200 > th dose dependent rect. 19 1
332 18.90 precipitation 0.1 4320 < th dose dependent rect. 13 5
369 18.93 temperature 30.0 10 < th dose dependent sin 2 NA
433 18.96 wind 7.0 43200 > th dose independent rect. 15 7
438 18.96 humidity 80.0 10 > th dose dependent rect. 7 11
467 18.98 wind 7.0 43200 > th dose dependent rect. 17 1
483 18.99 humidity 80.0 10 > th dose independent sin 23 NA
502 18.99 radiation 10.0 1440 > th dose independent rect. 8 23
529 19.00 radiation 10.0 1440 > th dose independent sin 2 NA
535 19.00 precipitation 0.1 43200 > th dose dependent rect. 17 3
542 19.01 humidity 80.0 1440 > th dose independent sin 2 NA
544 19.01 humidity 50.0 14400 < th dose independent rect. 15 2
573 19.02 humidity 50.0 14400 > th dose independent sin 11 NA
575 19.02 humidity 50.0 14400 > th dose independent rect. 15 2
595 19.03 humidity 80.0 1440 < th dose independent sin 2 NA
598 19.03 radiation 10.0 1440 > th dose independent no NA NA
602 19.03 humidity 50.0 14400 > th dose independent rect. 15 8
704 19.04 humidity 50.0 14400 > th dose independent rect. 15 5
721 19.04 humidity 90.0 10 < th dose dependent rect. 6 21
739 19.05 humidity 50.0 14400 > th dose independent rect. 15 13
761 19.05 radiation 10.0 1440 > th dose independent rect. 11 23
782 19.06 wind 7.0 43200 < th dose independent rect. 15 7
806 19.07 humidity 80.0 10 > th dose independent rect. 7 13
808 19.07 radiation 10.0 1440 < th dose dependent rect. 15 3
824 19.07 humidity 70.0 10 > th dose dependent rect. 7 23
825 19.07 humidity 90.0 30 < th dose dependent rect. 19 23
829 19.08 precipitation 0.1 720 > th dose independent rect. 20 8
837 19.08 radiation 1.0 1440 < th dose independent rect. 7 13
852 19.08 wind 9.0 43200 > th dose dependent rect. 20 1
872 19.09 radiation 1.0 1440 < th dose independent rect. 7 21
882 19.09 humidity 60.0 14400 < th dose dependent rect. 16 18
887 19.09 precipitation 0.1 4320 > th dose dependent rect. 21 22
912 19.10 radiation 10.0 270 > th dose independent rect. 16 23
915 19.10 radiation 10.0 1440 < th dose dependent rect. 13 5
919 19.10 humidity 80.0 10 > th dose dependent rect. 7 9
932 19.10 precipitation 0.1 4320 > th dose dependent rect. 19 23
935 19.11 wind 1.0 4320 > th dose independent rect. 4 1
951 19.11 precipitation 0.1 4320 > th dose dependent rect. 3 15
965 19.12 radiation 10.0 270 > th dose independent rect. 6 10
976 19.12 humidity 70.0 1440 > th dose independent rect. 16 21
984 19.12 radiation 10.0 1440 < th dose dependent rect. 13 7
987 19.12 radiation 10.0 1440 < th dose dependent rect. 13 11
989 19.12 temperature 30.0 10 < th dose dependent rect. 2 14