BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0343300 Os08g0343300|AK067775
(462 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03280.1 | chr1:803635-806758 FORWARD LENGTH=480 443 e-124
AT4G20340.1 | chr4:10985011-10987748 FORWARD LENGTH=476 379 e-105
AT4G20810.1 | chr4:11141427-11143597 REVERSE LENGTH=417 339 2e-93
>AT1G03280.1 | chr1:803635-806758 FORWARD LENGTH=480
Length = 479
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/426 (55%), Positives = 293/426 (68%), Gaps = 24/426 (5%)
Query: 4 MEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLAKAL 63
++PF +LVRL ARAFYDD + K DNQ K++R DNRG+A VVLDAL RRQWVREEDLAK L
Sbjct: 13 LQPFVKLVRLVARAFYDDYTTKSDNQQKSARSDNRGIAAVVLDALARRQWVREEDLAKDL 72
Query: 64 KLHSKQLRRILRFFEEEKLVTRDHRKEXXXXXXXXXXXXXXXXDGQSITKEGEEKVKMHT 123
+LH+KQLR+I+R FEEEKL+ RDHRKE DG++ E+KVK+HT
Sbjct: 73 QLHAKQLRKIIRLFEEEKLIMRDHRKETAKGAKMYSAAVAATTDGRA-----EDKVKLHT 127
Query: 124 HSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKRYSAFDALQLISYT 183
HSYCCLDYAQICDVVR+R+HRMKK+LKDEL+ +NT+Q Y CPNC+++Y+A DAL+LIS
Sbjct: 128 HSYCCLDYAQICDVVRFRLHRMKKRLKDELEDKNTVQEYGCPNCQRKYNALDALRLISMV 187
Query: 184 DEYFHCENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLKPLQAQLNR 243
D+ FHCENCNGELV E +KL SEE+ DGDDNAR+RRRE LK+M Q+++ Q+KPL QLNR
Sbjct: 188 DDSFHCENCNGELVVECNKLTSEEVVDGDDNARRRRRENLKNMLQKLEVQMKPLMDQLNR 247
Query: 244 VKDLPAPEFGS-LQSWERANIGAFGTADPSAADSSRNPQGQYG-TPMPYLGETKVEVALS 301
VKDLP PEFGS L RA + A D + D R+ QG YG TPMP+LGETKVEV L
Sbjct: 248 VKDLPIPEFGSFLAWEARAAMAARENGDLNPNDPLRS-QGGYGSTPMPFLGETKVEVNL- 305
Query: 302 GTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNL-----XXXXXXXXX 356
G G +D ++ G + LKVLPPWMIK+GMNLT+EQRGE + +
Sbjct: 306 GDGNEDVKSKGGD--SSLKVLPPWMIKEGMNLTEEQRGEMRQEAKVDGGAGAAAKLSDDK 363
Query: 357 XXXXXXXXXXXIQDEYIKAYYEALRKRQDEEEAKRKIQQE------GDTFASASHSERQV 410
++DEY+KAYY L K+Q E A R+ QQE + +S RQV
Sbjct: 364 KSAIGNGDEKDLKDEYLKAYYAELMKQQ--ELAARRNQQESAGEPTSGIQSGTVYSGRQV 421
Query: 411 GMKSKR 416
MK+KR
Sbjct: 422 SMKAKR 427
>AT4G20340.1 | chr4:10985011-10987748 FORWARD LENGTH=476
Length = 475
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/424 (49%), Positives = 275/424 (64%), Gaps = 22/424 (5%)
Query: 4 MEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLAKAL 63
+EPF +LVRL R FYD+ + + DNQ K+ + + +G AV+VLDALTRRQWVREEDLAK +
Sbjct: 14 LEPFVKLVRLLVRIFYDNYTPESDNQQKSVK-NVKGSAVIVLDALTRRQWVREEDLAKEV 72
Query: 64 KLHSKQLRRILRFFEEEKLVTRDHRKEXXXXXXXXXXXXXXXXDGQSITKEGEEKVKMHT 123
K ++K+LR+++R FEE+K V R HRKE DG++ E+ VK HT
Sbjct: 73 KRNAKELRKLIRHFEEQKFVMRYHRKETAKRAKMYSYAVGGTTDGRA-----EDNVKFHT 127
Query: 124 HSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKRYSAFDALQLISYT 183
HSYCCLDYAQI D+VRY++HR+KKK KDEL+ RNT+Q Y CPNCK++Y+A DAL+LIS
Sbjct: 128 HSYCCLDYAQIYDIVRYKLHRLKKKFKDELEDRNTVQEYGCPNCKRKYNALDALRLISME 187
Query: 184 DEYFHCENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLKPLQAQLNR 243
D+ FHCENCNGELV E +KL SEE+ D DNAR+R+REK+K Q ++ +LKPL +NR
Sbjct: 188 DDSFHCENCNGELVMECNKLISEEVVDRGDNARRRQREKVKVWLQDLEGELKPLMELINR 247
Query: 244 VKDLPAPEFGSL-QSWERANIGAFGTADPSAADSSRNPQGQYGTPMPYLGETKVEVALSG 302
VKDLP P F RA A D + D SR+ G TPMP+LGETKVEV L G
Sbjct: 248 VKDLPFPAFEPFPAWEARAAKAARENGDFNPDDPSRSLGGYGSTPMPFLGETKVEVNL-G 306
Query: 303 TGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNLXXXXXXXXXXXXXXX 362
G +D + G + LK+LPPWMIKQGM LT+EQRGE +N+
Sbjct: 307 EGNEDVTSTGGD--SSLKMLPPWMIKQGMKLTEEQRGEMRQEANVDGEAAKLSDDKKSVM 364
Query: 363 XX---XXXIQDEYIKAYYEALRKRQDEEEAKRKIQQEG-------DTFASASHSERQVGM 412
++DEY+KAYY A+ ++Q + A + +QE D ++ ++S+RQVGM
Sbjct: 365 ENGDDNKDLKDEYLKAYYAAIMEQQ--KLAAKLNEQESAGESTTTDIESATTYSDRQVGM 422
Query: 413 KSKR 416
KSKR
Sbjct: 423 KSKR 426
>AT4G20810.1 | chr4:11141427-11143597 REVERSE LENGTH=417
Length = 416
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 201/450 (44%), Positives = 271/450 (60%), Gaps = 59/450 (13%)
Query: 10 LVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLAKALKLHSKQ 69
+V+L A+ FYD+ + K +NQ K+++ + G+AV+VLDALTRRQWVREEDLAK LKL++KQ
Sbjct: 1 MVKLVAKTFYDNYTPKNNNQKKSAKNGSGGIAVLVLDALTRRQWVREEDLAKELKLNTKQ 60
Query: 70 LRRILRFFEEEKLVTRDHRKEXXXXXXXXXXXXXXXXDGQSITKEGEEKVKMHTHSYCCL 129
LR ILR+FEE++ + R HRKE + GE+KVK+H +SYCCL
Sbjct: 61 LRTILRYFEEQQFIMRVHRKEKSSA---------------TTNGRGEDKVKVHMYSYCCL 105
Query: 130 DYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKRYSAFDALQLISYTDEYFHC 189
DY+QI DV+RY++HRMKK+ KD L+ ++ +Q Y CPNCK++ +FHC
Sbjct: 106 DYSQIYDVIRYKLHRMKKEFKDVLEDKDNVQEYGCPNCKRKI--------------FFHC 151
Query: 190 ENCNGELVAESDKLASEE-MGDGDDNARKRRREKLKDMQQRIDEQLKPLQAQLNRVKDLP 248
ENCNGELV E +KL SEE + DG DN R RR+ LKD+ Q ++ +LKPL +NR+KDLP
Sbjct: 152 ENCNGELVMECNKLTSEEVVVDGSDNPRS-RRDHLKDLLQNMEVRLKPLMDHINRIKDLP 210
Query: 249 APEFGSLQSWE-RANIGAFGTADPSAADSSRNPQGQYG-TPMPYLGETKVEVALSGTGVK 306
P F S +WE R A D + D+ R PQG YG TPMP+LGET++EV L G +
Sbjct: 211 VPSFESFPAWETRVAKAARENGDLNPDDTLR-PQGGYGSTPMPFLGETEIEVNL---GEE 266
Query: 307 DEGAESGTNGNGL--KVLPPWMIKQGMNLTKEQRGETSNSSNLXXXXXXXXXXXXXXXXX 364
+E +S G+ K+ P W+IK+GMNL+ EQRGE + +
Sbjct: 267 NEDVKSDEVGDSSRRKLTPSWLIKKGMNLSDEQRGEIRHEA-----KADDGGSSMENGDD 321
Query: 365 XXXIQDEYIKAYYEALRKRQDEEEAKRKIQQEG------DTFASASHSERQVGMKSKRXX 418
++DEY+KAYY A+ + Q E A++ QQE D + S S+RQVGMKSKR
Sbjct: 322 DRNLKDEYLKAYYAAILEEQ--ELAEKLNQQESAGKVTTDIELATSSSDRQVGMKSKREE 379
Query: 419 XXXXXXXXXXQPAGNTAETYKLADLNVEAQ 448
GN YK+ DLNVEA+
Sbjct: 380 EEEEEASVAAN--GN----YKV-DLNVEAE 402
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,859,401
Number of extensions: 365606
Number of successful extensions: 1220
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1204
Number of HSP's successfully gapped: 3
Length of query: 462
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 360
Effective length of database: 8,310,137
Effective search space: 2991649320
Effective search space used: 2991649320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)