FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0137500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor TFIIE, alpha subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.86 (0.0313) R2 : 0.45
β1 : 1.72 (0.114) R2dD : 0.282 R2D : 0.197
β2 : 0.911 (0.0816) R2dC : 0.151 R2C : 0.113
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.565 (0.0667) R2dN8 : 0.116 R2N8 : 0.0232
σ : 0.588
deviance : 157.48
__
_____
C
peak time of C : 18.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.81 0.527 3.75 1.24 0.949 0.928 1.16 3.12 0.849 18.3 83 6014 -- --
138.26 0.548 3.76 1.61 0.879 1.04 1.25 -- 1.03 18.6 82 5660 -- --
128.92 0.529 3.75 1.24 0.935 0.918 -- 3.01 0.859 18.2 83 5930 -- --
140.86 0.553 3.76 1.63 0.887 1.05 -- -- 1.04 18.4 82 5674 -- --
168.84 0.605 3.73 1.22 -- 1 -- 2.98 0.89 -- 82 5674 -- --
154.8 0.583 3.86 1.73 0.905 -- 1.05 -- 0.561 18.5 -- -- -- --
157.48 0.588 3.86 1.72 0.911 -- -- -- 0.565 18.3 -- -- -- --
181.49 0.627 3.73 1.61 -- 1.14 -- -- 1.06 -- 81.41 5660 -- --
207.95 0.672 3.77 -- 0.989 1.39 -- -- 0.962 18.2 82 6062 -- --
200.54 0.662 3.84 1.69 -- -- -- -- 0.546 -- -- -- -- --
235.17 0.717 3.9 -- 0.887 -- -- -- 0.374 18.4 -- -- -- --
247.05 0.732 3.74 -- -- 1.36 -- -- 1 -- 82.79 5659 -- --
276.11 0.776 3.89 -- -- -- -- -- 0.358 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.60 humidity 90.0 4320 > th dose dependent rect. 8 1
2 118.36 precipitation 0.1 14400 > th dose independent rect. 17 1
5 118.76 precipitation 0.1 14400 < th dose independent rect. 17 1
6 118.76 precipitation 0.1 14400 < th dose dependent rect. 17 1
7 118.77 precipitation 0.1 14400 > th dose dependent rect. 17 1
8 119.06 precipitation 0.1 4320 < th dose independent rect. 7 1
9 119.06 precipitation 0.1 4320 < th dose dependent rect. 7 1
11 119.60 precipitation 0.1 4320 > th dose independent rect. 7 1
12 119.60 precipitation 0.1 4320 > th dose dependent rect. 7 1
15 121.26 precipitation 0.1 4320 > th dose independent rect. 3 5
17 121.31 precipitation 0.1 4320 < th dose independent rect. 3 5
18 121.31 precipitation 0.1 4320 < th dose dependent rect. 3 5
21 121.36 precipitation 0.1 4320 > th dose dependent rect. 3 3
22 121.40 humidity 90.0 4320 > th dose independent rect. 8 1
23 121.44 precipitation 0.1 4320 > th dose dependent rect. 3 5
25 121.53 precipitation 0.1 4320 > th dose independent rect. 3 3
30 121.76 precipitation 0.1 4320 < th dose independent rect. 3 3
31 121.76 precipitation 0.1 4320 < th dose dependent rect. 3 3
42 122.03 precipitation 0.1 4320 < th dose independent rect. 3 10
43 122.03 precipitation 0.1 4320 < th dose dependent rect. 3 10
58 122.64 humidity 80.0 4320 < th dose independent rect. 9 3
80 123.29 precipitation 0.1 4320 < th dose independent rect. 1 16
81 123.29 precipitation 0.1 4320 < th dose dependent rect. 1 16
83 123.33 precipitation 0.1 4320 > th dose independent rect. 24 17
87 123.42 precipitation 0.1 4320 > th dose dependent rect. 24 17
88 123.46 precipitation 0.1 4320 > th dose dependent rect. 1 8
97 123.62 wind 3.0 14400 < th dose dependent rect. 1 2
102 123.71 humidity 80.0 4320 > th dose independent rect. 9 3
110 123.85 precipitation 0.1 4320 < th dose independent rect. 3 13
111 123.85 precipitation 0.1 4320 < th dose dependent rect. 3 13
118 123.89 humidity 70.0 4320 > th dose dependent rect. 10 1
119 123.90 precipitation 0.1 4320 > th dose independent rect. 3 13
129 123.96 wind 3.0 14400 < th dose independent rect. 23 3
137 124.12 wind 3.0 14400 < th dose independent rect. 1 1
161 124.36 wind 1.0 14400 > th dose dependent rect. 1 1
169 124.52 precipitation 0.1 4320 > th dose independent rect. 1 8
179 124.61 precipitation 0.1 4320 < th dose independent rect. 1 8
180 124.61 precipitation 0.1 4320 < th dose dependent rect. 1 8
202 124.73 wind 3.0 14400 < th dose dependent rect. 23 4
275 125.30 wind 3.0 14400 > th dose independent rect. 23 3
292 125.51 precipitation 0.1 4320 > th dose dependent sin 6 NA
295 125.55 humidity 70.0 4320 > th dose independent rect. 15 1
315 125.93 precipitation 0.1 4320 < th dose independent sin 4 NA
316 125.93 precipitation 0.1 4320 < th dose dependent sin 4 NA
320 125.97 precipitation 0.1 4320 > th dose independent sin 4 NA
330 126.05 wind 1.0 14400 > th dose dependent rect. 23 3
336 126.11 humidity 70.0 4320 < th dose independent rect. 15 1
342 126.19 humidity 80.0 4320 > th dose dependent rect. 5 10
344 126.21 wind 3.0 14400 > th dose independent rect. 1 1
365 126.41 humidity 80.0 4320 > th dose dependent rect. 5 6
410 126.97 humidity 80.0 1440 > th dose dependent rect. 1 11
411 126.99 precipitation 0.1 14400 < th dose independent rect. 1 19
413 126.99 precipitation 0.1 14400 < th dose dependent rect. 1 19
418 127.01 precipitation 0.1 14400 > th dose independent rect. 1 19
431 127.08 precipitation 0.1 14400 < th dose independent rect. 3 17
432 127.08 precipitation 0.1 14400 < th dose dependent rect. 3 17
433 127.09 precipitation 0.1 14400 > th dose independent rect. 3 17
487 127.53 humidity 80.0 14400 > th dose independent rect. 13 1
564 128.08 humidity 80.0 14400 > th dose dependent rect. 13 1
595 128.38 humidity 70.0 4320 > th dose dependent sin 3 NA
597 128.38 precipitation 0.1 4320 > th dose dependent rect. 18 17
599 128.39 precipitation 0.1 4320 > th dose dependent rect. 18 19
613 128.45 precipitation 0.1 14400 < th dose independent rect. 13 4
614 128.45 precipitation 0.1 14400 < th dose dependent rect. 13 4
626 128.54 precipitation 0.1 14400 > th dose independent rect. 14 3
645 128.65 precipitation 0.1 14400 > th dose dependent rect. 14 3
646 128.65 precipitation 0.1 4320 > th dose dependent rect. 18 23
654 128.70 wind 3.0 14400 < th dose dependent rect. 22 9
664 128.72 precipitation 0.1 14400 > th dose dependent rect. 9 8
668 128.76 precipitation 0.1 14400 < th dose independent rect. 15 1
670 128.76 precipitation 0.1 14400 < th dose dependent rect. 15 1
672 128.77 precipitation 0.1 14400 > th dose independent rect. 15 1
695 128.89 precipitation 0.1 14400 < th dose independent rect. 9 8
696 128.89 precipitation 0.1 14400 < th dose dependent rect. 9 8
715 128.98 precipitation 0.1 14400 > th dose independent rect. 9 8
734 129.07 precipitation 0.1 14400 > th dose dependent rect. 7 10
738 129.09 wind 1.0 43200 > th dose independent rect. 4 3
739 129.09 humidity 80.0 4320 < th dose independent rect. 5 10
783 129.24 precipitation 0.1 14400 > th dose dependent rect. 23 21
827 129.44 wind 3.0 14400 < th dose independent rect. 22 9
838 129.48 humidity 80.0 4320 > th dose independent rect. 5 10
915 129.73 humidity 80.0 4320 > th dose independent rect. 21 19
947 129.84 precipitation 0.1 14400 < th dose independent rect. 7 10
950 129.84 precipitation 0.1 14400 < th dose dependent rect. 7 10
976 129.92 precipitation 0.1 14400 > th dose independent rect. 7 10
981 129.94 humidity 80.0 4320 < th dose independent rect. 21 18