BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0137500 Os11g0137500|AK070070
         (170 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03280.1  | chr1:803635-806758 FORWARD LENGTH=480              140   3e-34
AT4G20810.1  | chr4:11141427-11143597 REVERSE LENGTH=417          130   3e-31
AT4G20340.1  | chr4:10985011-10987748 FORWARD LENGTH=476          129   8e-31

>AT1G03280.1 | chr1:803635-806758 FORWARD LENGTH=480
          Length = 479

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 7/163 (4%)

Query: 9   RLVRMVARGFYEDVSLEED-QSKPNGSGSCGIVVVVLDALTRQQWVREEDLARSLMIPFN 67
           +LVR+VAR FY+D + + D Q K   S + GI  VVLDAL R+QWVREEDLA+ L +   
Sbjct: 18  KLVRLVARAFYDDYTTKSDNQQKSARSDNRGIAAVVLDALARRQWVREEDLAKDLQLHAK 77

Query: 68  RLRQITHFLEQQKLVRRYYRKEAIHDASISTASPSHVSHDAHLVPTNVAGKLKMIMQPYC 127
           +LR+I    E++KL+ R +RKE    A + +A+ +  +            K+K+    YC
Sbjct: 78  QLRKIIRLFEEEKLIMRDHRKETAKGAKMYSAAVAATTD------GRAEDKVKLHTHSYC 131

Query: 128 CLHYGQVYDVTLYRIHEMKKKLKDELDGNYMIQNYVCPNCERR 170
           CL Y Q+ DV  +R+H MKK+LKDEL+    +Q Y CPNC+R+
Sbjct: 132 CLDYAQICDVVRFRLHRMKKRLKDELEDKNTVQEYGCPNCQRK 174



>AT4G20810.1 | chr4:11141427-11143597 REVERSE LENGTH=417
          Length = 416

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 17/162 (10%)

Query: 10  LVRMVARGFYEDVSLEED-QSKPNGSGSCGIVVVVLDALTRQQWVREEDLARSLMIPFNR 68
           +V++VA+ FY++ + + + Q K   +GS GI V+VLDALTR+QWVREEDLA+ L +   +
Sbjct: 1   MVKLVAKTFYDNYTPKNNNQKKSAKNGSGGIAVLVLDALTRRQWVREEDLAKELKLNTKQ 60

Query: 69  LRQITHFLEQQKLVRRYYRKEAIHDASISTASPSHVSHDAHLVPTNVAGKLKMIMQPYCC 128
           LR I  + E+Q+ + R +RKE       S+A+ +    D          K+K+ M  YCC
Sbjct: 61  LRTILRYFEEQQFIMRVHRKEK------SSATTNGRGED----------KVKVHMYSYCC 104

Query: 129 LHYGQVYDVTLYRIHEMKKKLKDELDGNYMIQNYVCPNCERR 170
           L Y Q+YDV  Y++H MKK+ KD L+    +Q Y CPNC+R+
Sbjct: 105 LDYSQIYDVIRYKLHRMKKEFKDVLEDKDNVQEYGCPNCKRK 146



>AT4G20340.1 | chr4:10985011-10987748 FORWARD LENGTH=476
          Length = 475

 Score =  129 bits (324), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 6/167 (3%)

Query: 4   MEQLNRLVRMVARGFYEDVSLEEDQSKPNGSGSCGIVVVVLDALTRQQWVREEDLARSLM 63
           +E   +LVR++ R FY++ + E D  + +     G  V+VLDALTR+QWVREEDLA+ + 
Sbjct: 14  LEPFVKLVRLLVRIFYDNYTPESDNQQKSVKNVKGSAVIVLDALTRRQWVREEDLAKEVK 73

Query: 64  IPFNRLRQITHFLEQQKLVRRYYRKEAIHDASISTASPSHVSHDAHLVPTNVAGKLKMIM 123
                LR++    E+QK V RY+RKE    A + + +    +             +K   
Sbjct: 74  RNAKELRKLIRHFEEQKFVMRYHRKETAKRAKMYSYAVGGTTD------GRAEDNVKFHT 127

Query: 124 QPYCCLHYGQVYDVTLYRIHEMKKKLKDELDGNYMIQNYVCPNCERR 170
             YCCL Y Q+YD+  Y++H +KKK KDEL+    +Q Y CPNC+R+
Sbjct: 128 HSYCCLDYAQIYDIVRYKLHRLKKKFKDELEDRNTVQEYGCPNCKRK 174



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,650,173
Number of extensions: 139792
Number of successful extensions: 359
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 3
Length of query: 170
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 79
Effective length of database: 8,611,713
Effective search space: 680325327
Effective search space used: 680325327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)