BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0338900 Os08g0338900|AK073476
         (453 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0338900  Conserved hypothetical protein                      823   0.0  
Os09g0284600  Similar to Enhancer of polycomb-like protein        553   e-158

>Os08g0338900 Conserved hypothetical protein
          Length = 453

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/453 (90%), Positives = 411/453 (90%)

Query: 1   MSRLSFRPRPLDIHKKLPIVKSARELEDDETTLALRAAPPVLRHSQPEPAADGEAHPTSS 60
           MSRLSFRPRPLDIHKKLPIVKSARELEDDETTLALRAAPPVLRHSQPEPAADGEAHPTSS
Sbjct: 1   MSRLSFRPRPLDIHKKLPIVKSARELEDDETTLALRAAPPVLRHSQPEPAADGEAHPTSS 60

Query: 61  KKNVQEIPTPQYDDVDTYERDYTRTFAQPTSYIRARGARAEIGEFVXXXXXXXXXXXXXX 120
           KKNVQEIPTPQYDDVDTYERDYTRTFAQPTSYIRARGARAEIGEFV              
Sbjct: 61  KKNVQEIPTPQYDDVDTYERDYTRTFAQPTSYIRARGARAEIGEFVEYDLDNEDEDWLED 120

Query: 121 XXXXRKNLNPEKLEVLLFKLETLDHKARERAGIITPTFLGPIPVILQLDSAMEALQYLSV 180
               RKNLNPEKLEVLLFKLETLDHKARERAGIITPTFLGPIPVILQLDSAMEALQYLSV
Sbjct: 121 YNNERKNLNPEKLEVLLFKLETLDHKARERAGIITPTFLGPIPVILQLDSAMEALQYLSV 180

Query: 181 RYAVFQAVYNYWKSKRERWQKPILRRLQPPPPVNDTNPYNVFRPREKAYRLHTRRMQRRE 240
           RYAVFQAVYNYWKSKRERWQKPILRRLQPPPPVNDTNPYNVFRPREKAYRLHTRRMQRRE
Sbjct: 181 RYAVFQAVYNYWKSKRERWQKPILRRLQPPPPVNDTNPYNVFRPREKAYRLHTRRMQRRE 240

Query: 241 NSVQSFDKLRVVRRNLEQAKALMGALIKREERKRETMECEVHLRRIQMRYKHEAQLIDDG 300
           NSVQSFDKLRVVRRNLEQAKALMGALIKREERKRETMECEVHLRRIQMRYKHEAQLIDDG
Sbjct: 241 NSVQSFDKLRVVRRNLEQAKALMGALIKREERKRETMECEVHLRRIQMRYKHEAQLIDDG 300

Query: 301 IALSGLQQAGSSEDDYADSDDTANEQPYVRSVAFHPRFPDNKLSAVXXXXXXXXXXXXXX 360
           IALSGLQQAGSSEDDYADSDDTANEQPYVRSVAFHPRFPDNKLSAV              
Sbjct: 301 IALSGLQQAGSSEDDYADSDDTANEQPYVRSVAFHPRFPDNKLSAVPPLRLKRERELKRR 360

Query: 361 XHQNGWLFKRVPEMRDPEEPVMLFTRPIDPDKLKMAGIRPPLDPPIDSGTTAPPFRWQAX 420
            HQNGWLFKRVPEMRDPEEPVMLFTRPIDPDKLKMAGIRPPLDPPIDSGTTAPPFRWQA 
Sbjct: 361 PHQNGWLFKRVPEMRDPEEPVMLFTRPIDPDKLKMAGIRPPLDPPIDSGTTAPPFRWQAR 420

Query: 421 XXXXXXXXFDRWNPFLQVPVGQETNHRPSMPEG 453
                   FDRWNPFLQVPVGQETNHRPSMPEG
Sbjct: 421 IGRGGRIIFDRWNPFLQVPVGQETNHRPSMPEG 453



>Os09g0284600 Similar to Enhancer of polycomb-like protein
          Length = 441

 Score =  553 bits (1425), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 294/471 (62%), Positives = 331/471 (70%), Gaps = 50/471 (10%)

Query: 1   MSRLSFRPRPLDIHKKLPIVKSARELEDDETTLALRAAPP---VLRHSQPE-----PAAD 52
           MSRLSFRPRPLDIHKKLPI+KSARE EDD+ T A  A      +LR S PE      A +
Sbjct: 3   MSRLSFRPRPLDIHKKLPILKSAREFEDDDPTAAAVAVARAGVLLRQSAPELTAATTATE 62

Query: 53  GEAHPTSSKKNVQEIPTPQYDDVDTYERDYTRTFAQPTSYIRARGARAEIGEFVXXXXXX 112
           GE +PT +KKN+QEIPTPQ+D VDTYERDYTRTFAQPT YIR RGARAEIGEFV      
Sbjct: 63  GEGNPTPTKKNIQEIPTPQFDAVDTYERDYTRTFAQPTCYIRGRGARAEIGEFVEYDLDN 122

Query: 113 XXXXXXXXXXXXRKNLNPEKLEVLLFKLETLDHKARERAGIITPTFLGPIPVILQLDSAM 172
                       RKNLNPEKLEVLLFKLE LDHKARERAG ITPTF+GP+PV+LQLD+AM
Sbjct: 123 EDEDWLEDFNNERKNLNPEKLEVLLFKLEILDHKARERAGAITPTFIGPVPVLLQLDAAM 182

Query: 173 EALQYLSVRYAVFQAVYNYWKSKRERWQKPILRRLQPPPPVNDTNPYNVFRPREKAYRLH 232
           EALQYLSVRY VFQAVY+YWK KRERWQKPILRRLQ                        
Sbjct: 183 EALQYLSVRYGVFQAVYSYWKDKRERWQKPILRRLQ------------------------ 218

Query: 233 TRRMQRRENSVQSFDKLRVVRRNLEQAKALMGALIKREERKRETMECEVHLRRIQMRYKH 292
              MQRREN++QSF+KLR+VRRNL+QAKALM AL+KREE KRE MECEV+LRRIQM+YKH
Sbjct: 219 ---MQRRENNIQSFEKLRMVRRNLDQAKALMDALVKREETKREAMECEVNLRRIQMKYKH 275

Query: 293 EAQLIDDGIALSGLQQA----GSSEDDYADSDDTANEQPYVRSVAFHPRFPDNKLSAVXX 348
           EAQL+D+G ALSG QQ     GSSEDDYADSDDT  EQPY+R   F PRF D+KLS +  
Sbjct: 276 EAQLVDEGTALSGFQQVSSRFGSSEDDYADSDDTTTEQPYIRPPVFRPRFADHKLSVIPT 335

Query: 349 XXXXXXXXXXXXXHQNGWLFKRVPEMRDPEEPVMLFTRPIDPDKLKMAGIRPPLDPPIDS 408
                         QNGW+FK     RDPEEPV+LFTRP+DP+KL  AGI+PP DPPI++
Sbjct: 336 LRIKRERELKRRPQQNGWVFK-----RDPEEPVLLFTRPLDPEKLLAAGIKPPPDPPIEN 390

Query: 409 GTTAPPFRWQAXXXXXXXXXFDRWNPFLQVPVGQETNH------RPSMPEG 453
           G T PPFR +          FDRWNP LQ P+GQET++      RP  PE 
Sbjct: 391 GATMPPFRCRGRIGRGGRIIFDRWNPLLQTPIGQETSYYVPYSRRPPSPES 441



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,929,954
Number of extensions: 682933
Number of successful extensions: 2260
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2254
Number of HSP's successfully gapped: 2
Length of query: 453
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 349
Effective length of database: 11,605,545
Effective search space: 4050335205
Effective search space used: 4050335205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)