BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0327400 Os08g0327400|AK070992
(375 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0327400 Similar to Enoyl-ACP reductase (Fragment) 699 0.0
Os09g0277800 Similar to Enoyl-[acyl-carrier-protein] reduct... 592 e-169
AK108928 328 4e-90
>Os08g0327400 Similar to Enoyl-ACP reductase (Fragment)
Length = 375
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/375 (93%), Positives = 349/375 (93%)
Query: 1 MGASAATGMQMVAARPCISASQGMLTSRAAVSRIGRALSTTTGFATCPRICYSSPLGSSK 60
MGASAATGMQMVAARPCISASQGMLTSRAAVSRIGRALSTTTGFATCPRICYSSPLGSSK
Sbjct: 1 MGASAATGMQMVAARPCISASQGMLTSRAAVSRIGRALSTTTGFATCPRICYSSPLGSSK 60
Query: 61 RSGVAIRAMSSESGPQGLPIDLRGKRAFIAGVADDNGYGWXXXXXXXXXXXEILVGTWVP 120
RSGVAIRAMSSESGPQGLPIDLRGKRAFIAGVADDNGYGW EILVGTWVP
Sbjct: 61 RSGVAIRAMSSESGPQGLPIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILVGTWVP 120
Query: 121 ALNIFETSLRRGKFDESRKLPDGSLMEIVKVYPLDAVYDSPEDVPEDVKGNKRYAGSSNW 180
ALNIFETSLRRGKFDESRKLPDGSLMEIVKVYPLDAVYDSPEDVPEDVKGNKRYAGSSNW
Sbjct: 121 ALNIFETSLRRGKFDESRKLPDGSLMEIVKVYPLDAVYDSPEDVPEDVKGNKRYAGSSNW 180
Query: 181 TVKEVAESVKNDFGSIDILVHSLANGPEVTKPLLETSRRGYXXXXXXXXXXXXXXXQHFL 240
TVKEVAESVKNDFGSIDILVHSLANGPEVTKPLLETSRRGY QHFL
Sbjct: 181 TVKEVAESVKNDFGSIDILVHSLANGPEVTKPLLETSRRGYLAALSASSYSFVSLLQHFL 240
Query: 241 PIMNPGGASISLTYIASERAIPGYGGGMSSAKAALESDTKVLAFEAGRKGKIRVNTISAG 300
PIMNPGGASISLTYIASERAIPGYGGGMSSAKAALESDTKVLAFEAGRKGKIRVNTISAG
Sbjct: 241 PIMNPGGASISLTYIASERAIPGYGGGMSSAKAALESDTKVLAFEAGRKGKIRVNTISAG 300
Query: 301 PLGSRAAKAIGFIEKMIEYSYVNAPLQKELLADEVGNTAAFLVSPLASAITGSTVYVDNG 360
PLGSRAAKAIGFIEKMIEYSYVNAPLQKELLADEVGNTAAFLVSPLASAITGSTVYVDNG
Sbjct: 301 PLGSRAAKAIGFIEKMIEYSYVNAPLQKELLADEVGNTAAFLVSPLASAITGSTVYVDNG 360
Query: 361 LNTMGLAVDSPTISS 375
LNTMGLAVDSPTISS
Sbjct: 361 LNTMGLAVDSPTISS 375
>Os09g0277800 Similar to Enoyl-[acyl-carrier-protein] reductase [NADH],
chloroplast precursor (EC 1.3.1.9) (NADH-dependent
enoyl-ACP reductase)
Length = 371
Score = 592 bits (1527), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/375 (78%), Positives = 314/375 (83%), Gaps = 4/375 (1%)
Query: 1 MGASAATGMQMVAARPCISASQGMLTSRAAVSRIGRALSTTTGFATCPRICYSSPLGSSK 60
MGAS TG+QM AARPCI A Q +L SRAA+ GRALST TGFA+C + + P S
Sbjct: 1 MGASVTTGLQMAAARPCIPACQRLLGSRAALPSFGRALSTQTGFASCRKTASAGPFVSLN 60
Query: 61 RSGVAIRAMSSESGPQGLPIDLRGKRAFIAGVADDNGYGWXXXXXXXXXXXEILVGTWVP 120
A+RAMS+ QGLPIDLRGKRAFIAGVADDNGYGW EILVGTWVP
Sbjct: 61 HKRFAVRAMSA----QGLPIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILVGTWVP 116
Query: 121 ALNIFETSLRRGKFDESRKLPDGSLMEIVKVYPLDAVYDSPEDVPEDVKGNKRYAGSSNW 180
ALNIFETSLRRGKFDESRKLPDGSLMEI KVYPLDAV+DSPEDVP+DVK NKRYAGSSNW
Sbjct: 117 ALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDSPEDVPDDVKANKRYAGSSNW 176
Query: 181 TVKEVAESVKNDFGSIDILVHSLANGPEVTKPLLETSRRGYXXXXXXXXXXXXXXXQHFL 240
TVKEVAE+VKNDFG+IDILVHSLANGPEV LLETSR+GY QHFL
Sbjct: 177 TVKEVAETVKNDFGTIDILVHSLANGPEVKNSLLETSRKGYLAAVSASSYSFISLLQHFL 236
Query: 241 PIMNPGGASISLTYIASERAIPGYGGGMSSAKAALESDTKVLAFEAGRKGKIRVNTISAG 300
PIMNPGGA+ISLTYIASER IPGYGGGMSSAKAALESDT+VLA+EAGRKGKIRVNTISAG
Sbjct: 237 PIMNPGGATISLTYIASERTIPGYGGGMSSAKAALESDTRVLAYEAGRKGKIRVNTISAG 296
Query: 301 PLGSRAAKAIGFIEKMIEYSYVNAPLQKELLADEVGNTAAFLVSPLASAITGSTVYVDNG 360
PLGSRAAKAIGFIEKMIEYSYVNAPLQKELLADEVGNTAAFL SPLASAITGST+YVDNG
Sbjct: 297 PLGSRAAKAIGFIEKMIEYSYVNAPLQKELLADEVGNTAAFLASPLASAITGSTIYVDNG 356
Query: 361 LNTMGLAVDSPTISS 375
LNTMGLA+DSPT+S+
Sbjct: 357 LNTMGLALDSPTLST 371
>AK108928
Length = 225
Score = 328 bits (841), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 160/220 (72%), Positives = 180/220 (81%)
Query: 154 LDAVYDSPEDVPEDVKGNKRYAGSSNWTVKEVAESVKNDFGSIDILVHSLANGPEVTKPL 213
+DAV+D+PEDVPE+V+ NKRYAG+ +TV EVAE VK D G+ID++VHSLANGPEVTKPL
Sbjct: 1 MDAVFDTPEDVPEEVRANKRYAGAGQFTVSEVAERVKADIGNIDVVVHSLANGPEVTKPL 60
Query: 214 LETSRRGYXXXXXXXXXXXXXXXQHFLPIMNPGGASISLTYIASERAIPGYGGGMSSAKA 273
LETSR+GY Q F PIMNPGGA++SLTYIASE IPGYGGGMSSAKA
Sbjct: 61 LETSRKGYLAAMSASSYSFVSMMQRFGPIMNPGGAAVSLTYIASEDVIPGYGGGMSSAKA 120
Query: 274 ALESDTKVLAFEAGRKGKIRVNTISAGPLGSRAAKAIGFIEKMIEYSYVNAPLQKELLAD 333
LESDT+VLA+EAGRK ++RVNTISAGPLGSRAAKAIGFI+ MI YSY NAP+QKEL A
Sbjct: 121 TLESDTRVLAWEAGRKYQVRVNTISAGPLGSRAAKAIGFIDDMIRYSYANAPVQKELAAQ 180
Query: 334 EVGNTAAFLVSPLASAITGSTVYVDNGLNTMGLAVDSPTI 373
EVGN AAFL SPLASAITG T YVDNGLN MGL VDS T+
Sbjct: 181 EVGNVAAFLCSPLASAITGHTCYVDNGLNIMGLVVDSKTL 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,323,863
Number of extensions: 450109
Number of successful extensions: 863
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 863
Number of HSP's successfully gapped: 3
Length of query: 375
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 273
Effective length of database: 11,709,973
Effective search space: 3196822629
Effective search space used: 3196822629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)