BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0326000 Os08g0326000|AK106729
(251 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0326000 Nucleoside phosphatase GDA1/CD39 family protein 249 2e-66
Os08g0436100 Nucleoside phosphatase GDA1/CD39 family protein 66 3e-11
>Os08g0326000 Nucleoside phosphatase GDA1/CD39 family protein
Length = 251
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/251 (58%), Positives = 146/251 (58%)
Query: 1 MMRLRRGHITQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMIGXXXXXXXXXXXX 60
MMRLRRGHITQ SSMIG
Sbjct: 1 MMRLRRGHITQLLLLILAPVRLLQEITIEEAATTLAPPPPQTISSMIGSLRGRGRRLLAA 60
Query: 61 XXXXXXXXXXXXXXXXXXXXHGYGVVIDAGSTRSRVHVIAYRSPXXXXXXXXLPWIDWAR 120
HGYGVVIDAGSTRSRVHVIAYRSP LPWIDWAR
Sbjct: 61 ASALALLLLLLLSRSPRRRPHGYGVVIDAGSTRSRVHVIAYRSPAASAAAAALPWIDWAR 120
Query: 121 TASMKAAPGCCPSPPIRAAWVGRWRCSWSSLMVGGGEARHGRVRQGGKSXXXXXXXXXXX 180
TASMKAAPGCCPSPPIRAAWVGRWRCSWSSLMVGGGEARHGRVRQGGKS
Sbjct: 121 TASMKAAPGCCPSPPIRAAWVGRWRCSWSSLMVGGGEARHGRVRQGGKSRGRRVRLMVGG 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXAAWLVWRAAEIILFGVRSFFRSFWRAVSFSGARRSVNP 240
AAWLVWRAAEIILFGVRSFFRSFWRAVSFSGARRSVNP
Sbjct: 181 GGEGRHGRVRRGGKSRGRRVRRAAWLVWRAAEIILFGVRSFFRSFWRAVSFSGARRSVNP 240
Query: 241 VLIATAGLIRR 251
VLIATAGLIRR
Sbjct: 241 VLIATAGLIRR 251
>Os08g0436100 Nucleoside phosphatase GDA1/CD39 family protein
Length = 537
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 81 HGYGVVIDAGSTRSRVHVIAYRSPXXXXXXXXLPWIDWARTASMKAAPG 129
H YGVVIDAGST SRVHVIAYRS LP IDWARTASMKAAPG
Sbjct: 71 HEYGVVIDAGSTGSRVHVIAYRS-SSSSPASALPRIDWARTASMKAAPG 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.136 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,675,469
Number of extensions: 177077
Number of successful extensions: 755
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)