BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0304900 Os08g0304900|AK063295
         (409 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0304900  Similar to AtMMH-1 protein (F6D8.28 protein)        754   0.0  
Os06g0643600  Formamidopyrimidine-DNA glycolase family protein    410   e-115

>Os08g0304900 Similar to AtMMH-1 protein (F6D8.28 protein)
          Length = 409

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/409 (91%), Positives = 375/409 (91%)

Query: 1   MPELPEVEVARRALEEHCVGKRIVRCSAADDTKVIDGVAPPRLEAALVGRTISAARRKGK 60
           MPELPEVEVARRALEEHCVGKRIVRCSAADDTKVIDGVAPPRLEAALVGRTISAARRKGK
Sbjct: 1   MPELPEVEVARRALEEHCVGKRIVRCSAADDTKVIDGVAPPRLEAALVGRTISAARRKGK 60

Query: 61  NLWLALDSPPFPSFQFGMAGAIYIKGVELSKYKRSAVSPTEEWPLKYSKLLVVMDDGLEF 120
           NLWLALDSPPFPSFQFGMAGAIYIKGVELSKYKRSAVSPTEEWPLKYSKLLVVMDDGLEF
Sbjct: 61  NLWLALDSPPFPSFQFGMAGAIYIKGVELSKYKRSAVSPTEEWPLKYSKLLVVMDDGLEF 120

Query: 121 SFTDKRRFAKIRFLDNPEAVPPISELGPDALFEPLHLDDFVESLSRKKAPIKALLLDQSF 180
           SFTDKRRFAKIRFLDNPEAVPPISELGPDALFEPLHLDDFVESLSRKKAPIKALLLDQSF
Sbjct: 121 SFTDKRRFAKIRFLDNPEAVPPISELGPDALFEPLHLDDFVESLSRKKAPIKALLLDQSF 180

Query: 181 ISGIGNWIADEVLYQARIHPMQTASMISKEKCKALHQCIIEVIEKSLEVGCNSSQYPENW 240
           ISGIGNWIADEVLYQARIHPMQTASMISKEKCKALHQCIIEVIEKSLEVGCNSSQYPENW
Sbjct: 181 ISGIGNWIADEVLYQARIHPMQTASMISKEKCKALHQCIIEVIEKSLEVGCNSSQYPENW 240

Query: 241 IFHSREKKPGKKIDFITVGGRTSAYVPELQKLDGIDATASRAKISKEQSKSNKAAREVXX 300
           IFHSREKKPGKKIDFITVGGRTSAYVPELQKLDGIDATASRAKISKEQSKSNKAAREV  
Sbjct: 241 IFHSREKKPGKKIDFITVGGRTSAYVPELQKLDGIDATASRAKISKEQSKSNKAAREVDD 300

Query: 301 XXXXAKPAKRGRKQLVKATHEIQEDEEDTKESKRGRKQPAKTSKGSWKKAHHXXXXXXXX 360
               AKPAKRGRKQLVKATHEIQEDEEDTKESKRGRKQPAKTSKGSWKKAHH        
Sbjct: 301 DEEEAKPAKRGRKQLVKATHEIQEDEEDTKESKRGRKQPAKTSKGSWKKAHHSSEGSGDD 360

Query: 361 XXXXXAVDKVVAEQGKRRDPKQPAEXXXXXXXXXXXXXXXRPQRKKRQL 409
                AVDKVVAEQGKRRDPKQPAE               RPQRKKRQL
Sbjct: 361 DSDDEAVDKVVAEQGKRRDPKQPAEAKSSSDKGGSAAPAKRPQRKKRQL 409



>Os06g0643600 Formamidopyrimidine-DNA glycolase family protein
          Length = 400

 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/306 (66%), Positives = 240/306 (78%), Gaps = 10/306 (3%)

Query: 1   MPELPEVEVARRALEEHCVGKRIVRCSAADDTKVIDGVAPPRL--EAALVGRTISAARRK 58
           MPELPEVE ARRALE HCVG+RI RC+ ADD KV+   A  R+  E A+VGRTI AARR+
Sbjct: 1   MPELPEVEAARRALEAHCVGRRIARCAVADDPKVVVAAAGGRVAFERAMVGRTIVAARRR 60

Query: 59  GKNLWLALDSPPFPSFQFGMAGAIYIKGVELSKYKRSAVSPTEEWPLKYSKLLVVMDDGL 118
           GKNLWL LD+PPFPSFQFGMAGAIYIKGV ++KYKRS VS T+EWP KYSK  V +DDGL
Sbjct: 61  GKNLWLRLDAPPFPSFQFGMAGAIYIKGVPVTKYKRSVVSSTDEWPSKYSKFFVQLDDGL 120

Query: 119 EFSFTDKRRFAKIRFLDNPEAVPPISELGPDALFEPLHLDDFVESLSRKKAPIKALLLDQ 178
           EFSFTDKRRFA++R  ++PE VPPISELGPDALFEP+  D F +SLSRKK  IKALLLDQ
Sbjct: 121 EFSFTDKRRFARVRLFEDPETVPPISELGPDALFEPMSSDSFADSLSRKKIGIKALLLDQ 180

Query: 179 SFISGIGNWIADEVLYQARIHPMQTASMISKEKCKALHQCIIEVIEKSLEVGCNSSQYPE 238
           SFISGIGNWIADEVLYQ+R HP+Q AS +S+E C+ALHQ I EV++ ++EV  +   +P 
Sbjct: 181 SFISGIGNWIADEVLYQSRTHPLQIASSLSRESCEALHQSIQEVVKYAVEVDADCDCFPV 240

Query: 239 NWIFHSR-EKKPGK----KIDFITVGGRTSAYVPELQKLDGIDATASRAKISK-EQSKSN 292
            W+FH R  KKPGK    KI+FIT GGRT+AYVP+LQKL G+   +S+  I+  EQ   N
Sbjct: 241 EWLFHHRWGKKPGKVNGQKIEFITAGGRTTAYVPQLQKLTGMQ--SSKVVIANPEQVAEN 298

Query: 293 KAAREV 298
             A+E+
Sbjct: 299 DDAKEI 304



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,922,413
Number of extensions: 503800
Number of successful extensions: 1407
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 306
Effective length of database: 11,657,759
Effective search space: 3567274254
Effective search space used: 3567274254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)